CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25990

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.94 96.7 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.91 95.6 At1g59535 842244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g01310 814659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g01780 814709 S-locus glycoprotein, putative F:sugar binding;P:recognition of pollen;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
0.89 94.6 At3g46390 823789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
335.5 100.0 E-MEXP-509-raw-cel-829148561
311.8 100.0 E-MEXP-509-raw-cel-829148597
234.0 100.0 E-MEXP-509-raw-cel-829148525
195.8 100.0 E-MEXP-509-raw-cel-829148201
189.2 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
171.2 100.0 E-MEXP-509-raw-cel-829148385
171.0 100.0 E-MEXP-509-raw-cel-829148420
164.1 99.9 E-MEXP-509-raw-cel-829148090
164.0 99.9 E-MEXP-509-raw-cel-829148877
160.6 99.9 E-MEXP-509-raw-cel-829148348
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-20 95 At5g15840 831441 CO (CONSTANS) Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1. C.G. S.X.
0.02 3e-1 32 At5g14850 831337 mannosyltransferase, putative F:mannosyltransferase activity, transferase activity, transferring glycosyl groups;P:GPI anchor biosynthetic process, GPI anchor metabolic process;C:endoplasmic reticulum membrane, intrinsic to endoplasmic reticulum membrane;MFOPB C.G. S.X.
0.04 3e-1 32 At2g27770 817323 unknown protein F:unknown;P:unknown;C:chloroplast;P C.G. S.X.
0.01 3e-1 32 At1g30610 839941 emb2279 (embryo defective 2279) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA C.G. S.X.
0.04 1e+0 30 At5g55710 835665 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP C.G. S.X.
0.01 1e+0 30 At5g27330 832791 - F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV C.G. S.X.
0.02 1e+0 30 At5g56350 835735 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-1 32 Glycine max Gma.11398.4.S1_at BQ786480 - - 7e-32 At1g10630 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) C.G. S.X.
0.06 3e+0 28 Hordeum vulgare HVSMEn0018C16r2_x_at HVSMEn0018C16r2 - - 3e+0 At3g43420 unknown protein C.G. S.X.
0.07 3e+0 30 Oryza sativa OsAffx.1430.2.A1_at - - - 0 C.G. S.X.
0.04 2e+0 30 Populus trichocarpa PtpAffx.9433.1.A1_at DN493515 hypothetical protein - 3e-1 At4g31330 unknown protein C.G. S.X.
0.06 6e+0 28 Triticum aestivum TaAffx.53882.1.S1_at CA688123 - - 4e+0 At4g00342 unknown protein C.G. S.X.
0.05 4e-1 30 Vitis vinifera 1619889_at CF207362 - - 2e-2 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.04 2e+0 28 Zea mays Zm.19278.1.A1_at CO529816 hypothetical protein LOC100272889 - 2e-2 At4g33360 terpene cyclase/mutase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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