CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25890

Gene name glycine-rich protein / oleosin

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g25890 817130 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB S.X. H.G.
0.86 93.1 At2g38905 818475 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO S.X. H.G.
0.67 81.6 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV S.X. H.G.
0.67 81.6 At4g16160 827308 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco. S.X. H.G.
0.40 50.8 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
253.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
247.8 100.0 E-MEXP-849-raw-cel-1181980982
226.0 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
221.4 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
216.3 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
190.8 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
184.8 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
177.1 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
175.5 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
171.6 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-6 52 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF C.G. S.X.
0.03 2e-4 46 At1g75230 843860 HhH-GPD base excision DNA repair family protein F:catalytic activity;P:DNA repair, base-excision repair;C:nucleus;OBFPAM C.G. S.X.
0.04 9e-4 44 At4g12050 826813 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.04 4e-3 42 At2g36080 818181 DNA-binding protein, putative Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. C.G. S.X.
0.02 4e-3 42 At2g01690 814698 binding F:binding;P:biological_process unknown;C:plasma membrane;OMFPBV C.G. S.X.
0.05 1e-2 40 At5g09750 830835 HEC3 (HECATE 3) F:transcription factor activity, DNA binding;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;POF C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-3 42 Glycine max GmaAffx.56281.1.S1_at BU761780 - - 3e+0 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) C.G. S.X.
0.05 4e-1 34 Hordeum vulgare Contig5597_s_at Contig5597 - - 4e+0 At5g54095 unknown protein C.G. S.X.
0.07 1e-1 38 Oryza sativa Os09g0496000 9637.m02815 - - 2e-1 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.05 8e-2 38 Populus trichocarpa PtpAffx.153622.1.A1_s_at CV249906 hypothetical protein - 1e+0 At5g59990 - C.G. S.X.
0.06 1e-2 40 Triticum aestivum TaAffx.104796.1.S1_x_at CA744716 - - 3e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1616177_at BQ800589 similar to 3-methyladenine DNA glycosylase, putative; 31680-30045 - 2e+1 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.9422.1.A1_at BM268752 hypothetical protein LOC100279301 - 7e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019915 The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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