CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25820

Gene name transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g25820 817124 transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.59 74.7 At5g51900 835265 cytochrome P450 family F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA S.X. H.G.
0.58 73.8 At2g35570 3768501 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.58 73.8 At5g12990 831139 CLE40 (CLAVATA3/ESR-RELATED 40) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. S.X. H.G.
0.57 73.8 At2g28170 817363 ATCHX7 member of Putative Na+/H+ antiporter family S.X. H.G.
0.54 69.5 At1g65740 842885 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At1g61440 842438 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.53 68.6 At4g31960 829326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.52 67.4 At3g60110 825181 DNA binding F:DNA binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.51 66.3 At1g19040 838486 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
330.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
258.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
239.9 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
233.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
231.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
223.3 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.2 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
213.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
207.6 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-27 123 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.13 4e-19 95 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.19 1e-16 87 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.14 1e-16 87 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.08 1e-16 87 At2g35700 818139 ERF38 (ERF FAMILY PROTEIN 38) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. C.G. S.X.
0.08 2e-9 63 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.04 1e-6 54 At1g02040 839284 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFVBA C.G. S.X.
0.03 2e-5 50 At3g28830 822515 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA C.G. S.X.
0.07 9e-5 48 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-5 50 Glycine max GmaAffx.85915.2.S1_at BQ296170 - - 6e-17 At1g77200 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.10 1e-17 89 Hordeum vulgare Contig11552_at Contig11552 - - 1e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.12 7e-10 65 Oryza sativa OsAffx.14299.2.A1_at - - - 0 C.G. S.X.
0.19 8e-6 52 Populus trichocarpa PtpAffx.218700.1.S1_at pmrna34416 AP2/ERF domain-containing transcription factor - 3e-6 At2g25820 transcription factor C.G. S.X.
0.13 6e-9 61 Triticum aestivum TaAffx.86939.1.S1_at CA598527 - - 4e-3 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.16 1e-4 46 Vitis vinifera 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) C.G. S.X.
0.03 1e-1 36 Zea mays Zm.323.1.S1_at AB042261.1 hypothetical protein LOC100280379 - 3e-2 At3g56380 ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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