CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25810

Gene name TIP4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.41 52.4 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA S.X. H.G.
0.75 86.9 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.67 81.6 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.61 76.7 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.60 75.7 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB S.X. H.G.
0.50 65.3 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. S.X. H.G.
0.50 65.3 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.46 59.8 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.40 50.8 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
140.3 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
104.2 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
94.3 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
86.5 99.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
85.3 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
75.0 99.9 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
66.1 99.8 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
60.5 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
58.9 99.8 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
53.3 99.8 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 4e-7 56 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete C.G. S.X.
0.07 2e-5 50 At2g36830 818255 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Complete knock out mutants have no detectable phenotype from the wild type. C.G. S.X.
0.17 1e-4 48 At3g16240 820870 DELTA-TIP Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. C.G. S.X.
0.08 6e-3 42 At4g17340 827446 TIP2 F:water channel activity;P:transport, response to salt stress;C:plasma membrane, chloroplast, vacuole, membrane;BPMOFAV C.G. S.X.
0.03 9e-2 38 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.04 4e-1 36 At4g01470 828051 TIP1 Encodes AtTIP1;3, functions as water and urea channels in pollen. C.G. S.X.
0.01 4e-1 36 At1g66950 843013 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.03 2e+0 34 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV C.G. S.X.
0.01 2e+0 34 At5g21040 832228 FBX2 (F-BOX PROTEIN 2) Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-9 63 Glycine max GmaAffx.89363.1.S1_s_at CK606317 - - 2e-9 At2g25810 TIP4 C.G. S.X.
0.09 4e-2 38 Hordeum vulgare Contig7377_s_at Contig7377 - - 1e-1 At2g25810 TIP4 C.G. S.X.
0.05 1e-5 52 Oryza sativa Os01g0202800 NM_188316.1 - Major intrinsic protein 9e-2 At4g18910 NIP1 C.G. S.X.
0.35 9e-6 52 Populus trichocarpa PtpAffx.52630.1.A1_at CV233830 aquaporin, MIP family, TIP subfamily - 9e-6 At2g25810 TIP4 C.G. S.X.
0.09 7e-6 52 Triticum aestivum Ta.16450.2.S1_at BQ171992 - - 9e-6 At2g25810 TIP4 C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1622502_at CK138165.1 - - 5e-34 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) C.G. S.X.
0.06 3e-6 52 Zea mays Zm.615.1.S1_at AF057183.1 porin2 - 2e-12 At3g16240 DELTA-TIP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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