CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25760

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.75 86.9 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. S.X. H.G.
0.73 85.5 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
0.57 73.8 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB S.X. H.G.
0.50 65.3 At2g27900 817335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.3 99.6 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
13.4 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.9 99.3 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.6 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.6 99.3 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.3 99.3 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.6 99.2 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.5 99.2 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.3 99.2 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.2 99.2 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 5e-12 73 At3g03940 819551 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.27 5e-12 73 At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA C.G. S.X.
0.13 2e-11 71 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.11 7e-8 59 At3g03930 820302 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.02 6e-2 40 At5g57015 835804 ckl12 (Casein Kinase I-like 12) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPBFVA C.G. S.X.
0.01 3e-1 38 At2g29100 817458 ATGLR2.9 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 1e+0 36 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-26 121 Glycine max GmaAffx.77608.1.S1_at BI498177 - - 7e-27 At2g25760 protein kinase family protein C.G. S.X.
0.32 8e-37 155 Hordeum vulgare Contig12162_at Contig12162 - - 2e-25 At2g25760 protein kinase family protein C.G. S.X.
0.43 3e-58 228 Oryza sativa Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein C.G. S.X.
0.61 3e-146 519 Populus trichocarpa PtpAffx.214112.1.S1_at pmrna27471 hypothetical protein - 3e-124 At2g25760 protein kinase family protein C.G. S.X.
0.16 3e-7 57 Triticum aestivum Ta.7065.1.S1_at BJ254686 - - 4e-43 At3g03940 protein kinase family protein C.G. S.X.
0.18 4e-34 145 Vitis vinifera 1622362_at CD802017 hypothetical protein LOC100254265 - 6e-34 At2g25760 protein kinase family protein C.G. S.X.
0.17 3e-11 69 Zea mays Zm.5471.1.A1_at BG841029 hypothetical protein LOC100273539 - 3e-38 At3g13670 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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