CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25600

Gene name SPIK (Shaker Pollen Inward K+ channel)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At2g25600 817099 SPIK (Shaker Pollen Inward K+ channel) mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family S.X. H.G.
0.87 93.5 At5g18910 832009 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVA S.X. H.G.
0.85 92.4 At1g50610 841483 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.84 91.9 At1g79860 844325 ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth. S.X. H.G.
0.83 91.4 At5g39400 833936 PTEN1 F:phosphatase activity;P:N-terminal protein myristoylation, pollen development;C:cellular_component unknown;MOFPBA S.X. H.G.
0.83 91.4 At1g02000 839289 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-D-glucuronate 4-epimerase S.X. H.G.
0.83 91.4 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA S.X. H.G.
0.82 90.9 At2g21480 816687 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.79 89.1 At5g05070 830389 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.79 89.1 At3g02810 821236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
288.1 100.0 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
242.2 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
222.5 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
191.4 100.0 E-MEXP-1138-raw-cel-1432772682
190.1 100.0 E-MEXP-1138-raw-cel-1432773162
185.8 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
172.6 100.0 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
171.3 100.0 E-MEXP-1138-raw-cel-1432772650
171.2 100.0 E-MEXP-1138-raw-cel-1432772554
167.2 100.0 E-MEXP-1138-raw-cel-1432772618
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 0 1160 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.14 2e-12 75 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. C.G. S.X.
0.01 1e-6 56 At5g46240 834666 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface. C.G. S.X.
0.02 4e-4 48 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. C.G. S.X.
0.01 1e-3 46 At1g51350 841558 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid lumen;MFPO C.G. S.X.
0.01 9e-2 40 At5g28520 832945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 9e-2 40 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA C.G. S.X.
0.01 3e-1 38 At5g25270 832599 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVP C.G. S.X.
0.01 3e-1 38 At3g56870 824854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 38 Glycine max PsAffx.C155000013_at PsAffx.C155000013 - - 1e-2 At1g12665 - C.G. S.X.
0.03 6e-1 36 Hordeum vulgare Y09748_at Y09748 potassium channel - 3e-11 At5g46240 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) C.G. S.X.
0.03 7e-4 48 Oryza sativa Os01g0648000 AK120308.1 - Potassium channel 3e-20 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
0.21 1e-29 133 Populus trichocarpa PtpAffx.214184.1.S1_at pmrna27591 hypothetical protein - 7e-30 At2g25600 SPIK (Shaker Pollen Inward K+ channel) C.G. S.X.
0.03 4e-4 48 Triticum aestivum Ta.241.1.S1_at AF207745.1 AKT1-like potassium channel - 5e-10 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619157_at AF359521.1 inward rectifying shaker-like K+ channel - 3e-66 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.03 2e-10 67 Zea mays Zm.9559.1.S1_at AY461584.1 inward rectifying shaker K+ channel - 6e-21 At5g46240 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009860 Growth of pollen via tip extension of the intine wall.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage