Gene omics information

Query gene ID At2g25450
Gene name 2-oxoglutarate-dependent dioxygenase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g254508170832-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseS.X.H.G.
0.3338.1At1g04970839357lipid-binding serum glycoprotein family proteinF:lipid binding;P:biological_process unknown;C:plasma membrane, vacuole;MPOS.X.H.G.
0.3338.1At1g47128841122RD21 (responsive to dehydration 21)cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21)S.X.H.G.
0.3338.1At5g56180835717ATARP8 (ACTIN-RELATED PROTEIN 8)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.S.X.H.G.
0.114.1At5g65910836720BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.020.4At4g03020828111transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.799.6E-MEXP-1112-raw-cel-1590665845
23.399.6E-MEXP-1112-raw-cel-1590665793
20.399.6GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.799.5GSM133817Yang_1-2_old-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
18.599.5E-MEXP-1112-raw-cel-1590665377
18.599.5E-MEXP-1112-raw-cel-1590665429
17.899.5GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
17.399.5GSM88051csn4-1_mutant replicate 3GSE3865CSN4-1 mutant analysis
15.999.5GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.799.5GSM75511Col-0 6h MOCK replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.512e-40167At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.611e-35151At2g308308176342-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.056e-1065At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMC.G.S.X.
0.176e-1065At3g614008253122-oxoglutarate-dependent dioxygenase, putative1-aminocyclopropane-1-carboxylate oxidase-like proteinC.G.S.X.
0.094e-859At5g59540836073oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.174e-859At1g066208371712-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.141e-757At1g066408371732-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.042e-654At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-240Glycine maxGmaAffx.70005.1.S1_s_atCA936335--3e-10At1g066202-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.024e+032Hordeum vulgareEBro08_SQ009_L23_atEBro08_SQ009_L23--1e+0At1g03650GCN5-related N-acetyltransferase (GNAT) family proteinC.G.S.X.
0.034e+034Oryza sativaOs03g06905009631.m04713-2OG-Fe(II) oxygenase domain containing protein2e+0At2g254502-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.033e+034Populus trichocarpaPtpAffx.57107.1.A1_atCV238410hypothetical protein-1e+0At3g14452unknown proteinC.G.S.X.
0.029e+032Triticum aestivumTaAffx.52353.1.S1_atCA708787--1e+1At5g20165unknown proteinC.G.S.X.
0.024e-238Vitis vinifera1616836_atCB979921hypothetical protein LOC100260276-4e+0At1g35440CYCT1C.G.S.X.
0.024e+032Zea maysZm.2538.1.A1_atBM336091hypothetical protein LOC100278766-4e+0At4g01935unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010439Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
XGO:0019761The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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