CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g25160

Gene name CYP82F1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At2g25160 817054 CYP82F1 member of CYP82F S.X. H.G.
0.40 50.8 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV S.X. H.G.
0.40 50.8 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
0.32 35.7 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At1g43020 840901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
195.3 100.0 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
186.7 100.0 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
160.9 99.9 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
126.1 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
124.1 99.9 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
97.9 99.9 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
85.4 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
81.9 99.9 GSM266669 Arabidopsis, root cells, cortex, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
79.8 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
72.3 99.9 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At3g01710 821092 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.01 2e-1 38 At5g46910 834736 transcription factor jumonji (jmj) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO C.G. S.X.
0.01 2e-1 38 At3g13110 820499 ATSERAT2 Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. C.G. S.X.
0.01 2e-1 38 At2g45580 819166 CYP76C3 member of CYP76C C.G. S.X.
0.01 8e-1 36 At5g41820 834187 geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related F:protein binding, protein prenyltransferase activity;P:protein amino acid prenylation;C:unknown;MOPFBA C.G. S.X.
0.01 8e-1 36 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP C.G. S.X.
0.01 8e-1 36 At4g24490 828551 protein prenyltransferase F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max Gma.139.1.S1_at AF022461.1 cytochrome P450 CYP82C1 - 1e-2 At2g25160 CYP82F1 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig17320_at Contig17320 - - 1e-1 At3g61040 CYP76C7 C.G. S.X.
0.01 2e+0 36 Oryza sativa Os12g0550600 AK059672.1 - Conserved hypothetical protein 1e+0 At1g63600 protein kinase-related C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.224093.1.S1_at pmrna42330 hypothetical protein - 3e-3 At1g11440 - C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.4998.1.S1_at CA725647 - - 1e+1 At4g12790 ATP-binding family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1607897_at CF372278 hypothetical protein LOC100253836 - 3e-10 At3g10185 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.18400.1.S1_at CO533217 - - 2e-3 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage