CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g24980

Gene name proline-rich extensin-like family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.83 91.4 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.96 97.3 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. S.X. H.G.
0.96 97.3 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA S.X. H.G.
0.94 96.7 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.94 96.7 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein S.X. H.G.
0.94 96.7 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.93 96.4 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.92 96.0 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) S.X. H.G.
0.92 96.0 At4g26010 828707 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.92 96.0 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.2 99.9 E-MEXP-722-raw-cel-1062243559
81.4 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
76.6 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
69.6 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
66.3 99.8 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.7 99.8 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
63.3 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
61.7 99.8 GSM133255 RIKEN-GODA12A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
58.4 99.8 GSM133278 RIKEN-GODA1B-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
58.1 99.8 GSM133261 RIKEN-GODA2A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 1643 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.78 0 1564 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.78 0 1505 At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.81 0 1388 At4g08400 826398 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVA C.G. S.X.
0.69 0 1328 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. C.G. S.X.
0.54 0 1023 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA C.G. S.X.
0.54 0 1007 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA C.G. S.X.
0.54 0 696 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA C.G. S.X.
0.47 6e-153 541 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-6 56 Glycine max GmaAffx.93270.1.S1_x_at CF808995 - - 2e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig14167_at Contig14167 - - 2e-3 At3g14480 glycine/proline-rich protein C.G. S.X.
0.02 7e+0 34 Oryza sativa OsAffx.7403.1.S1_at - - - 0 C.G. S.X.
0.13 1e-3 46 Populus trichocarpa PtpAffx.224886.1.S1_x_at pmrna43793 hypothetical protein - 2e-6 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.86293.1.S1_x_at CA612009 - - 6e-2 At4g08400 proline-rich extensin-like family protein C.G. S.X.
0.06 4e-3 42 Vitis vinifera 1615789_at BQ795769 - - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.02 1e+0 34 Zea mays Zm.1200.1.S1_at AY105762.1 - - 9e-1 At5g06630 proline-rich extensin-like family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009664 A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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