CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g24850

Gene name TAT3 (TYROSINE AMINOTRANSFERASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At2g24850 817022 TAT3 (TYROSINE AMINOTRANSFERASE 3) Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid. S.X. H.G.
0.57 73.8 At1g61120 842405 TPS04 (TERPENE SYNTHASE 04) Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. S.X. H.G.
0.55 70.6 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM S.X. H.G.
0.53 68.6 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
0.31 33.8 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. S.X. H.G.
0.18 11.4 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
120.2 99.9 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
101.0 99.9 E-MEXP-546-raw-cel-863289586
87.6 99.9 GSM322556 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
85.5 99.9 E-MEXP-546-raw-cel-863289424
83.4 99.9 GSM271079 Arabidopsis plant (tga2-5-6), 4h_response to OPDA_rep1 GSE10732 Identification of TGA-regulated genes in response to phytoprostane A1 and OPDA
72.1 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
69.6 99.9 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
69.4 99.9 E-MEXP-546-raw-cel-863289532
68.0 99.9 E-MEXP-546-raw-cel-863289476
59.5 99.8 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 8e-16 85 At2g20610 816585 SUR1 (SUPERROOT 1) Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis. C.G. S.X.
0.18 4e-5 50 At4g28420 828959 aminotransferase, putative F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPAMF C.G. S.X.
0.10 3e-3 44 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF C.G. S.X.
0.01 2e-1 38 At3g54800 824645 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;POM C.G. S.X.
0.02 2e-1 38 At1g19640 838551 JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE) Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max PsAffx.CL601Contig1_at PsAffx.CL601Contig1 - - 6e+0 At3g23380 RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5) C.G. S.X.
0.04 2e-5 50 Hordeum vulgare Contig7288_at Contig7288 - - 5e-5 At2g24850 TAT3 (TYROSINE AMINOTRANSFERASE 3) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os.12793.1.S1_x_at - - - 0 C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.207542.1.S1_at pmrna14966 glycosyltransferase, CAZy family GT8 - 2e-12 At3g06260 GATL4 (Galacturonosyltransferase-like 4) C.G. S.X.
0.07 1e-5 52 Triticum aestivum TaAffx.111048.1.S1_at CA649091 - - 5e-6 At2g24850 TAT3 (TYROSINE AMINOTRANSFERASE 3) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1621993_at CF519068 - - 4e+0 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.2888.1.A1_at AY108014.1 hypothetical protein LOC100191922 - 1e-3 At2g17370 HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
C GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00017 Aromatic amino acid biosynthesis
00087 Tyrosine degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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