CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g24610

Gene name ATCNGC14

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family S.X. H.G.
0.80 89.8 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM S.X. H.G.
0.67 81.6 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA S.X. H.G.
0.67 81.6 At4g37400 829894 CYP81F3 member of CYP81F S.X. H.G.
0.47 61.2 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
113.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
97.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.5 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
79.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.8 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.4 99.9 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
69.2 99.9 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
65.3 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.9 99.8 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
51.0 99.8 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-27 125 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family C.G. S.X.
0.10 2e-11 71 At5g14870 831339 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. C.G. S.X.
0.14 2e-8 61 At3g48010 823956 ATCNGC16 member of Cyclic nucleotide gated channel family C.G. S.X.
0.07 5e-6 54 At2g28260 817372 ATCNGC15 member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 1e-3 46 At2g46440 819252 ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS) Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen. C.G. S.X.
0.07 1e-3 46 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family C.G. S.X.
0.06 4e-3 44 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.05 2e-2 42 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-15 85 Glycine max Gma.7365.1.S1_at CD412721 - - 6e-39 At4g30360 ATCNGC17 C.G. S.X.
0.04 6e-4 46 Hordeum vulgare Contig14060_at Contig14060 - - 3e-3 At4g30360 ATCNGC17 C.G. S.X.
0.13 1e-14 83 Oryza sativa Os02g0789100 CR280795 - Cyclic nucleotide-binding domain containingprotein 9e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) C.G. S.X.
0.27 8e-24 113 Populus trichocarpa PtpAffx.225069.1.S1_at pmrna44154 hypothetical protein - 6e-24 At2g24610 ATCNGC14 C.G. S.X.
0.09 3e-10 67 Triticum aestivum TaAffx.28217.1.S1_at CA663317 - - 7e-11 At2g24610 ATCNGC14 C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1613268_at CB342482 hypothetical protein LOC100260148 - 2e-3 At3g48010 ATCNGC16 C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.933.1.S1_at AI795521 - - 3e+0 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
L GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage