CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g24570

Gene name WRKY17

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At2g24570 816993 WRKY17 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. S.X. H.G.
0.86 93.1 At5g24230 832490 - F:unknown;P:unknown;C:cellular_component unknown;PFM S.X. H.G.
0.67 81.6 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. S.X. H.G.
0.57 73.8 At1g30110 839890 ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25) F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:diadenosine tetraphosphate catabolic process;C:cellular_component unknown;BOPMA S.X. H.G.
0.40 50.8 At5g53110 835391 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
128.7 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
111.3 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
82.4 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
78.0 99.9 E-MEXP-807-raw-cel-1173272948
74.3 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
70.7 99.9 E-MEXP-807-raw-cel-1173273170
68.4 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
66.4 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
58.9 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
49.6 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 4e-103 375 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
0.14 6e-16 85 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). C.G. S.X.
0.09 2e-15 83 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. C.G. S.X.
0.09 5e-10 65 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.06 1e-7 57 At3g04670 819625 WRKY39 member of WRKY Transcription Factor; Group II-d C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 8e-16 85 Glycine max GmaAffx.91989.1.S1_at CF807714 - - 3e-16 At2g24570 WRKY17 C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig4844_s_at Contig4844 - - 2e+0 At4g23070 ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7) C.G. S.X.
0.10 1e-9 65 Oryza sativa Os04g0605100 AK072938.1 - WRKY transcription factor 68 7e-22 At4g31550 WRKY11 C.G. S.X.
0.22 5e-20 99 Populus trichocarpa PtpAffx.11208.1.A1_at CV255185 hypothetical protein - 5e-20 At2g24570 WRKY17 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.62805.1.S1_at BQ606484 - - 2e-14 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.15 1e-8 59 Vitis vinifera 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 C.G. S.X.
0.04 2e-1 36 Zea mays Zm.4272.1.S1_at AI834123 hypothetical protein LOC100273049 - 7e-16 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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