Gene omics information

Query gene ID At2g24120
Gene name SCA3 (SCABRA 3)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g24120816946SCA3 (SCABRA 3)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVBS.X.H.G.
0.5570.6At4g27340828842Met-10+ like family proteinF:unknown;P:biological_process unknown;C:unknown;BAOMFPS.X.H.G.
0.5065.3At3g10270820189ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)Protein targeting to mitochondria is influenced by UTR sequences.S.X.H.G.
0.4152.4At1g09900837522pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMFBAS.X.H.G.
0.4050.8At4g31210829248DNA topoisomerase family proteinF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;OBMFAPVS.X.H.G.
0.3643.6At4g02990828116mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.3541.6At4g09730826559DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVS.X.H.G.
0.3541.6At1g69200843251kinaseF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMFS.X.H.G.
0.3439.8At3g02060821294DEAD/DEAH box helicase, putativeF:transcription factor activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFPAVS.X.H.G.
0.3235.7At5g11270830997OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
97.799.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
22.199.6GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
15.799.5GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
15.699.5GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
14.999.4GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seeds
14.799.4GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
14.599.4GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seeds
14.499.4GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
14.499.4GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.122e-965At5g15700831424DNA-directed RNA polymerase (RPOT2)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVBC.G.S.X.
0.122e-965At1g68990843232DNA-directed RNA polymerase, mitochondrial (RPOMT)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVBC.G.S.X.
0.014e-138At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.C.G.S.X.
0.014e-138At2g45620819170nucleotidyltransferase family proteinF:nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.014e-138At1g25280839112AtTLP10 (TUBBY LIKE PROTEIN 10)Member of TLP familyC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-448Glycine maxGmaAffx.51952.1.S1_atCA785033--4e-18At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)C.G.S.X.
0.051e-552Hordeum vulgareContig11563_atContig11563--1e-5At2g24120SCA3 (SCABRA 3)C.G.S.X.
0.172e-29133Oryza sativaOs09g0246200AB096014.1-T7-like RNA polymerase5e-19At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)C.G.S.X.
0.454e-48194Populus trichocarpaPtpAffx.214451.1.S1_atpmrna28099hypothetical protein-2e-48At2g24120SCA3 (SCABRA 3)C.G.S.X.
0.132e-34149Triticum aestivumTa.19803.1.S1_atAF091838.1--1e-23At5g15700DNA-directed RNA polymerase (RPOT2)C.G.S.X.
0.151e-1997Vitis vinifera1613839_atCB001705--2e-14At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)C.G.S.X.
0.131e-39165Zea maysZm.629.1.S1_atAF127021.1RNA polymerase T phage-like 1-9e-15At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage