CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23900

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.91 95.6 At5g20410 832163 MGD2 Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation. S.X. H.G.
0.89 94.6 At2g31500 817708 CPK24 member of Calcium Dependent Protein Kinase S.X. H.G.
0.87 93.5 At3g54800 824645 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;POM S.X. H.G.
0.85 92.4 At1g55560 842005 sks14 (SKU5 Similar 14) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.85 92.4 At2g18470 816362 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.85 92.4 At5g50830 835155 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.84 91.9 At1g14420 838004 AT59 F:lyase activity, pectate lyase activity;P:plant-type cell wall organization;C:endomembrane system;PBFO S.X. H.G.
0.82 90.9 At5g39880 833985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At2g27180 817260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
204.5 100.0 E-ATMX-35-raw-cel-1574334880
191.5 100.0 E-ATMX-35-raw-cel-1574334848
189.8 100.0 E-ATMX-35-raw-cel-1574334864
165.0 100.0 E-MEXP-285-raw-cel-440782791
151.4 99.9 E-MEXP-1138-raw-cel-1432772970
151.4 99.9 E-MEXP-285-raw-cel-440782725
136.1 99.9 E-MEXP-1138-raw-cel-1432773098
135.8 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
131.7 99.9 E-MEXP-1138-raw-cel-1432773130
131.5 99.9 E-MEXP-1138-raw-cel-1432773002
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.47 9e-56 218 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.08 1e-8 61 At4g23500 828450 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cell wall;FPBOMA C.G. S.X.
0.11 1e-8 61 At3g61490 825322 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.05 2e-7 57 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA C.G. S.X.
0.02 5e-5 50 At5g49215 834981 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PBFOMA C.G. S.X.
0.02 2e-1 38 At3g09150 820069 HY2 (ELONGATED HYPOCOTYL 2) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-5 50 Glycine max Gma.3308.1.S1_at CD414773 - - 4e-2 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 2e-2 40 Hordeum vulgare Contig8722_at Contig8722 - - 3e-3 At4g23500 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 9e-5 50 Oryza sativa Os03g0124900 BI804847 - Glycoside hydrolase, family 28 protein 1e-2 At4g33440 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.17 7e-11 69 Populus trichocarpa PtpAffx.204033.1.S1_at pmrna7957 hypothetical protein - 5e-11 At2g23900 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.6184.1.S1_at BJ242002 - - 4e-12 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1608756_at BQ798436 hypothetical protein LOC100255362 - 2e-13 At4g23500 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 1e+0 34 Zea mays Zm.7154.1.A1_at AY111597.1 - - 4e-7 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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