CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23840

Gene name HNH endonuclease domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA S.X. H.G.
0.67 81.6 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO S.X. H.G.
0.50 65.3 At5g57040 835808 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:chloroplast;BPOM S.X. H.G.
0.50 65.3 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF S.X. H.G.
0.22 17.5 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.3 99.7 GSM133787 Brueggemann_A-5-Brueg-Mck_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
24.2 99.6 GSM133786 Brueggemann_A-4-Brueg-PpH_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
21.9 99.6 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
19.4 99.6 GSM170897 Col-0 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
18.6 99.5 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.2 99.5 GSM131605 ATGE_41_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.2 99.5 GSM170911 abh1 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
16.2 99.5 GSM133114 JD AT+EO TIME EXP3 UNINF 4D GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
15.4 99.5 GSM77175 04h low CO2 + light replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
14.6 99.4 E-ATMX-32-raw-cel-1562974681
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 7e-3 42 At1g74560 843797 NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. C.G. S.X.
0.03 3e-2 40 At1g18800 838462 NRP2 (NAP1-RELATED PROTEIN 2) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. C.G. S.X.
0.02 1e-1 38 At4g32350 829369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 1e-1 38 At2g24650 817001 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:apoplast;PM C.G. S.X.
0.01 2e+0 34 At5g22320 832292 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.02 2e+0 34 At4g22720 828368 glycoprotease M22 family protein F:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:cellular_component unknown;OBMFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-24 113 Glycine max GmaAffx.28909.1.S1_at BU545641 - - 2e-24 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.13 6e-17 87 Hordeum vulgare Contig11597_at Contig11597 - - 1e-16 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.20 1e-12 75 Oryza sativa Os07g0170200 CB656315 - HNH endonuclease domain containing protein 6e-13 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.34 7e-16 85 Populus trichocarpa PtpAffx.211074.1.S1_at pmrna21755 hypothetical protein - 3e-16 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.10 3e-14 79 Triticum aestivum Ta.4354.1.S1_s_at CA709975 - - 3e-14 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.28 1e-23 109 Vitis vinifera 1620856_at CF207007.1 hypothetical protein LOC100264031 - 3e-23 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
0.08 3e-3 42 Zea mays Zm.19095.1.S1_at CO521601 hypothetical protein LOC100274082 - 6e-3 At2g23840 HNH endonuclease domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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