CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23800

Gene name GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g23800 816912 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase S.X. H.G.
1.00 100.0 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO S.X. H.G.
0.95 97.0 At1g28430 839741 CYP705A24 member of CYP705A S.X. H.G.
0.95 97.0 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.95 97.0 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA S.X. H.G.
0.95 97.0 At5g07540 830647 GRP16 (GLYCINE-RICH PROTEIN 16) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12). S.X. H.G.
0.95 97.0 At5g61605 836282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.90 95.1 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). S.X. H.G.
0.86 93.1 At5g07530 830646 GRP17 (GLYCINE RICH PROTEIN 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. S.X. H.G.
0.78 88.6 At5g07560 830649 GRP20 (GLYCINE-RICH PROTEIN 20) Lipid-binding oleosins, glycine-rich protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
388.6 100.0 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
293.9 100.0 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
242.0 100.0 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
235.3 100.0 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
231.0 100.0 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
210.5 100.0 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
210.2 100.0 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
202.1 100.0 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
199.7 100.0 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
183.5 100.0 GSM106924 opr3_OPDA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 1e-41 171 At2g18640 816379 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4) Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase C.G. S.X.
0.23 6e-38 159 At2g18620 816377 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMV C.G. S.X.
0.31 3e-27 123 At4g36810 829834 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. C.G. S.X.
0.22 1e-11 71 At1g49530 841377 GGPS6 (geranylgeranyl pyrophosphate synthase 6) encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase C.G. S.X.
0.23 1e-8 61 At3g20160 821560 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV C.G. S.X.
0.06 4e-8 59 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV C.G. S.X.
0.17 9e-6 52 At3g14510 820674 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV C.G. S.X.
0.12 6e-4 46 At3g29430 822604 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV C.G. S.X.
0.06 6e-4 46 At3g14530 820678 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-2 42 Glycine max GmaAffx.55634.1.S1_at BM892048 - - 4e-3 At2g23800 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) C.G. S.X.
0.03 7e-2 38 Hordeum vulgare HVSMEl0012E24f_at HVSMEl0012E24f - - 3e-1 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) C.G. S.X.
0.06 2e-2 42 Oryza sativa OsAffx.23247.1.S1_at - - - 0 C.G. S.X.
0.13 2e-4 48 Populus trichocarpa PtpAffx.203964.1.S1_at pmrna7819 hypothetical protein - 5e-10 At2g18620 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.9205.1.S1_at CA607977 - - 4e+0 At1g57680 - C.G. S.X.
0.09 5e-11 67 Vitis vinifera 1610176_at CB341974 hypothetical protein LOC100266842 - 9e-16 At4g36810 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.646.1.A1_at AI715074 - - 3e-1 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00046 Isoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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