CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23770

Gene name protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At2g23770 816909 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVA S.X. H.G.
0.44 57.2 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.37 45.0 At3g26910 822307 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV S.X. H.G.
0.37 45.0 At1g76070 843939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF S.X. H.G.
0.33 38.1 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family S.X. H.G.
0.31 33.8 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. S.X. H.G.
0.30 32.1 At5g05190 830401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV S.X. H.G.
0.29 30.3 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. S.X. H.G.
0.29 30.3 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. S.X. H.G.
0.29 30.3 At4g30210 829144 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.1 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
143.4 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
128.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
125.2 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
119.6 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
99.0 99.9 E-MEXP-807-raw-cel-1173272948
85.7 99.9 E-MEXP-1443-raw-cel-1581869863
79.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.5 99.8 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At5g63940 836515 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.03 6e-2 40 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 2e-1 38 At5g15010 831353 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBA C.G. S.X.
0.01 2e-1 38 At5g59260 836044 lectin protein kinase, putative F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-1 38 At5g46360 834679 KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3) Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. C.G. S.X.
0.01 2e-1 38 At2g01710 814700 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAV C.G. S.X.
0.02 2e-1 38 At1g63950 842698 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At1g49520 841376 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.01 9e-1 36 At3g26700 822282 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max GmaAffx.61655.1.S1_at BU084809 - - 2e-8 At1g51310 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig8980_at Contig8980 - - 8e-4 At1g63980 D111/G-patch domain-containing protein C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.25174.1.S1_at - - - 0 C.G. S.X.
0.02 3e-1 38 Populus trichocarpa Ptp.7723.1.S1_at DN489103 hypothetical protein - 3e-11 At5g55830 lectin protein kinase, putative C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.81481.1.S1_at CA688823 - - 9e-1 At4g21780 unknown protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1614379_at CB982376 - - 2e-1 At1g17150 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 6e+0 32 Zea mays ZmAffx.1319.1.S1_at 40794996-32 - - 4e-2 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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