CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23320

Gene name WRKY15

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). S.X. H.G.
0.40 50.8 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. S.X. H.G.
0.40 50.8 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata S.X. H.G.
0.38 46.7 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. S.X. H.G.
0.36 43.6 At5g61210 836242 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation S.X. H.G.
0.32 35.7 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
0.31 33.8 At1g22280 838835 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVA S.X. H.G.
0.16 8.8 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.4 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
34.3 99.7 E-MEXP-1443-raw-cel-1581869803
32.6 99.7 E-MEXP-1443-raw-cel-1581869745
29.5 99.7 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
28.2 99.7 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
28.2 99.7 E-MEXP-1094-raw-cel-1379507273
27.3 99.7 E-MEXP-1094-raw-cel-1379507313
26.7 99.7 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
26.1 99.7 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
24.5 99.6 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 6e-16 85 At2g24570 816993 WRKY17 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
0.07 1e-13 77 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
0.09 5e-13 75 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. C.G. S.X.
0.08 8e-12 71 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d C.G. S.X.
0.09 3e-8 59 At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). C.G. S.X.
0.02 1e-4 48 At3g14090 820625 ATEXO70D3 (exocyst subunit EXO70 family protein D3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 1e-4 48 At2g25130 817051 armadillo/beta-catenin repeat family protein F:binding;P:unknown;C:chloroplast;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-22 107 Glycine max Gma.14035.1.A1_at CD414105 WRKY14 protein - 9e-23 At2g23320 WRKY15 C.G. S.X.
0.04 1e-3 44 Hordeum vulgare HVSMEb0010I05r2_at HVSMEb0010I05r2 - - 3e+0 At1g68905 - C.G. S.X.
0.06 7e-11 69 Oryza sativa Os.27274.1.S1_at - - - 0 C.G. S.X.
0.15 5e-20 99 Populus trichocarpa PtpAffx.63488.3.A1_at CV273768 - - 3e-17 At4g24240 WRKY7 C.G. S.X.
0.04 1e-4 48 Triticum aestivum TaAffx.522.1.S1_at BQ802337 - - 6e-2 At1g02405 proline-rich family protein C.G. S.X.
0.14 1e-26 119 Vitis vinifera 1611650_at CA808599 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 C.G. S.X.
0.03 5e-5 48 Zea mays Zm.17962.1.A1_at CK826755 - - 6e+0 At1g24600 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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