CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23290

Gene name AtMYB70 (myb domain protein 70)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g23290 816861 AtMYB70 (myb domain protein 70) Member of the R2R3 factor gene family. S.X. H.G.
0.20 14.4 At2g14850 815974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM S.X. H.G.
0.07 1.9 At4g39570 830111 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOVA S.X. H.G.
0.04 0.9 At2g32450 817806 calcium-binding EF hand family protein F:binding, zinc ion binding, calcium ion binding;P:unknown;C:plasma membrane;BOMAPF S.X. H.G.
0.04 0.9 At1g06410 837152 ATTPS7 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. S.X. H.G.
0.02 0.4 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB S.X. H.G.
0.02 0.4 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.5 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.8 99.8 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
50.9 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.1 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.3 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1 99.7 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
36.9 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 4e-66 252 At4g37260 829880 MYB73 (MYB DOMAIN PROTEIN 73) Member of the R2R3 factor gene family. C.G. S.X.
0.22 4e-26 119 At3g50060 824168 MYB77 Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes. C.G. S.X.
0.19 3e-14 79 At5g67300 836865 MYBR1 (MYB DOMAIN PROTEIN R1) Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. C.G. S.X.
0.07 5e-7 56 At3g55730 824739 MYB109 (myb domain protein 109) putative transcription factor MYB109 (MYB109) mRNA, C.G. S.X.
0.04 5e-4 46 At3g09230 820079 AtMYB1 (myb domain protein 1) member of MYB3R- and R2R3- type MYB- encoding genes C.G. S.X.
0.06 5e-4 46 At2g39880 818575 MYB25 (myb domain protein 25) Encodes a putative transcription factor (MYB25). C.G. S.X.
0.03 2e-3 44 At3g27785 822399 MYB118 putative transcription factor (MYB118) C.G. S.X.
0.03 2e-3 44 At1g08810 837403 MYB60 (myb domain protein 60) putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. C.G. S.X.
0.02 7e-3 42 At4g29230 829044 anac075 (Arabidopsis NAC domain containing protein 75) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 7e-7 56 Glycine max GmaAffx.60367.1.S1_at AW351262 MYB transcription factor MYB68 - 8e-9 At5g67300 MYBR1 (MYB DOMAIN PROTEIN R1) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HVSMEb0017B20r2_at HVSMEb0017B20r2 - - 3e-4 At2g41870 remorin family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa OsAffx.5748.1.S1_at - - - 0 C.G. S.X.
0.28 3e-21 103 Populus trichocarpa PtpAffx.205371.1.S1_at pmrna10638 hypothetical protein - 1e-25 At4g37260 MYB73 (MYB DOMAIN PROTEIN 73) C.G. S.X.
0.06 5e-4 46 Triticum aestivum TaAffx.34241.1.S1_at CD867928 - - 8e-4 At2g23290 AtMYB70 (myb domain protein 70) C.G. S.X.
0.29 8e-31 133 Vitis vinifera 1622782_at CF605860 hypothetical protein LOC100243698 - 9e-26 At4g37260 MYB73 (MYB DOMAIN PROTEIN 73) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.12706.3.A1_a_at AI665270 p8MTCP1 /// p8MTCP1 - 3e-1 At3g50580 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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