CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23240

Gene name plant EC metallothionein-like family 15 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At2g23240 816856 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;POMB S.X. H.G.
0.90 95.1 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA S.X. H.G.
0.88 94.0 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.86 93.1 At2g23110 816843 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV S.X. H.G.
0.82 90.9 At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM S.X. H.G.
0.80 89.8 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
0.76 87.4 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.76 87.4 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1261.6 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
742.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
724.2 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
398.3 100.0 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
182.3 100.0 GSM133312 RIKEN-LI1B GSE5701 AtGenExpress: Basic hormone treatment of seeds
119.4 99.9 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
104.8 99.9 GSM134312 Penfield_1-14_embryo-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
102.7 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
96.4 99.9 GSM133313 RIKEN-LI2A GSE5701 AtGenExpress: Basic hormone treatment of seeds
89.4 99.9 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 1e-41 169 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF C.G. S.X.
0.12 1e-1 36 At3g61826 6241376 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.01 2e+0 32 At5g52882 5008305 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.03 2e+0 32 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.03 2e+0 32 At1g18080 838388 ATARCA Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. C.G. S.X.
0.01 8e+0 30 At5g51920 835267 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPMFA C.G. S.X.
0.01 8e+0 30 At5g49160 834975 MET1 (METHYLTRANSFERASE 1) Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation. C.G. S.X.
0.02 8e+0 30 At5g16080 831465 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 32 Glycine max HgAffx.13391.1.S1_at CB374591 - - 3e+0 At2g23240 plant EC metallothionein-like family 15 protein C.G. S.X.
0.04 4e+0 30 Hordeum vulgare EBro08_SQ003_A06_at EBro08_SQ003_A06 - - 1e+0 At2g32190 unknown protein C.G. S.X.
0.04 9e-1 34 Oryza sativa Os02g0631700 9630.m04024 - ZmRR2 protein (Response regulator 2) 3e-1 At1g59940 ARR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.08 3e+0 32 Populus trichocarpa PtpAffx.222494.1.S1_at pmrna39958 hypothetical protein - 2e+0 At2g23240 plant EC metallothionein-like family 15 protein C.G. S.X.
0.04 2e+0 32 Triticum aestivum TaAffx.57748.1.S1_at CA625381 - - 4e-3 At5g47840 AMK2 (Adenosine monophosphate kinase) C.G. S.X.
0.11 6e-4 42 Vitis vinifera 1613608_at CB916843 - - 2e-8 At2g42000 plant EC metallothionein-like family 15 protein C.G. S.X.
0.05 3e+0 30 Zea mays Zm.13705.1.A1_at AY106620.1 - - 9e-7 At3g55770 LIM domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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