CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g23170

Gene name GH3.3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. S.X. H.G.
0.75 86.9 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. S.X. H.G.
0.50 65.3 At2g14960 815985 GH3.1 encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. S.X. H.G.
0.46 59.8 At3g58190 824988 LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) This gene contains two auxin-responsive element (AuxRE). S.X. H.G.
0.25 22.6 At1g15580 838128 IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5) auxin induced protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
139.8 99.9 E-MEXP-715-raw-cel-1121836221
126.8 99.9 E-MEXP-715-raw-cel-1121836361
121.9 99.9 E-MEXP-715-raw-cel-1121836087
113.9 99.9 E-MEXP-715-raw-cel-1121836113
110.8 99.9 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
107.8 99.9 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
107.4 99.9 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
105.1 99.9 E-MEXP-715-raw-cel-1121836005
101.4 99.9 E-MEXP-715-raw-cel-1121836247
100.7 99.9 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 1e-126 454 At4g37390 829893 BRU6 Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity. C.G. S.X.
0.70 7e-54 212 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. C.G. S.X.
0.32 5e-36 153 At2g14960 815985 GH3.1 encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. C.G. S.X.
0.09 6e-8 59 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. C.G. S.X.
0.02 4e-6 54 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF C.G. S.X.
0.12 6e-5 50 At5g54510 835539 DFL1 (DWARF IN LIGHT 1) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). C.G. S.X.
0.03 4e-3 44 At1g28130 839706 GH3.17 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. C.G. S.X.
0.01 6e-2 40 At2g41820 818781 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-24 113 Glycine max GmaAffx.55925.1.S1_at BQ612189 - - 2e-24 At2g23170 GH3.3 C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig19494_at Contig19494 - - 2e+0 At4g16240 unknown protein C.G. S.X.
0.11 8e-9 63 Oryza sativa Os07g0592600 AK101193.1 - GH3 homolog (Fragment) 3e-16 At2g14960 GH3.1 C.G. S.X.
0.23 7e-27 123 Populus trichocarpa PtpAffx.72392.1.A1_at CA824901 GH3 family protein - 2e-27 At2g23170 GH3.3 C.G. S.X.
0.07 4e-3 44 Triticum aestivum TaAffx.87187.1.S1_at CA594339 - - 6e-6 At2g14960 GH3.1 C.G. S.X.
0.12 1e-6 54 Vitis vinifera 1612001_s_at CF604676 hypothetical protein LOC100250868 - 2e-14 At1g59500 GH3.4 C.G. S.X.
0.05 5e-13 75 Zea mays Zm.13354.1.S1_s_at AW067009 indole-3-acetic acid-amido synthetase GH3.8 - 4e-12 At2g14960 GH3.1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0010252 Maintenance of endogenous concentration of primary auxin equilibrium, or constant level of auxin in a biological system by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation.
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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