Gene omics information

Query gene ID At2g23150
Gene name NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.S.X.H.G.
0.3235.7At5g60870836208regulator of chromosome condensation (RCC1) family proteinF:Ran GTPase binding;P:biological_process unknown;C:mitochondrion;MOBPFAVS.X.H.G.
0.1710.2At1g44960841061-F:unknown;P:biological_process unknown;C:plasma membrane;BOPAMS.X.H.G.
0.124.9At2g434208189433-beta hydroxysteroid dehydrogenase/isomerase family proteinF:binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, catalytic activity;P:steroid biosynthetic process, metabolic process;C:plasma membrane;BOMPAFVS.X.H.G.
0.124.9At5g63010836421WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAS.X.H.G.
0.114.1At1g23890839000NHL repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAPS.X.H.G.
0.103.4At1g74240843764mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.082.3At1g20100838599unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBVS.X.H.G.
0.082.3At3g48150823970APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8)anaphase-promoting complex or cyclosome subunitS.X.H.G.
0.071.9At5g25150832586TAF5 (TBP-ASSOCIATED FACTOR 5)Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
298.8100.0GSM133779Lindsey_1-5_globular-basal_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
82.499.9GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
66.299.8GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
64.499.8GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
63.799.8GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
59.499.8E-MEXP-1797-raw-cel-1669768030
58.299.8E-MEXP-1797-raw-cel-1669767940
52.099.8GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
49.399.8E-MEXP-1797-raw-cel-1669768039
48.499.8GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.327e-72272At1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.C.G.S.X.
0.402e-44180At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.234e-27123At4g18790827613NRAMP5member of Nramp2 familyC.G.S.X.
0.022e-448At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.021e-242At5g46840834728RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVAC.G.S.X.
0.021e-242At4g39710830126immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAC.G.S.X.
0.011e-242At1g73110843642ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putativeF:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAMC.G.S.X.
0.015e-240At4g26600828767nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.282e-1791Glycine maxGma.470.1.S1_atAY169405.1ferrous ion membrane transport protein DMT1-2e-17At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.039e-238Hordeum vulgareContig24105_atContig24105--9e-2At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.093e-861Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.406e-64246Populus trichocarpaPtpAffx.218535.1.S1_atpmrna34191nramp transporter-4e-64At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.045e-240Triticum aestivumTa.13247.1.S1_a_atCK198318--9e-9At1g47240NRAMP2C.G.S.X.
0.076e-857Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.021e+034Zea maysZmAffx.466.1.A1_atAI677405--8e-4At1g52870peroxisomal membrane protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0055072Any process involved in the maintenance of an internal equilibrium of iron ions within an organism or cell.
XGO:0010043A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
XGO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
XGO:0010670Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
SGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
SGO:0006828The directed movement of manganese (Mn) ions into, out of, within or between cells.
SGO:0015691The directed movement of cadmium (Cd) ions into, out of, within or between cells.
SGO:0015692The directed movement of lead (Pb) ions into, out of, within or between cells.
NGO:0006875Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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