Gene omics information

Query gene ID At2g23140
Gene name binding / ubiquitin-protein ligase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6982.9At2g23140816846binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVAS.X.H.G.
0.5368.6At1g22020838807SHM6 (serine hydroxymethyltransferase 6)Encodes a putative serine hydroxymethyltransferase.S.X.H.G.
0.5065.3At5g07270830618ankyrin repeat family proteinF:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVAS.X.H.G.
0.4862.5At3g53090824475UPL7encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.S.X.H.G.
0.4862.5At3g58050824974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.4761.2At5g185252745988ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPAS.X.H.G.
0.4457.2At1g59520842242CW7Encodes CW7.S.X.H.G.
0.4253.9At3g03810821131EDA30 (embryo sac development arrest 30)F:molecular_function unknown;P:N-terminal protein myristoylation, polar nucleus fusion, pollen tube development;C:chloroplast;PS.X.H.G.
0.3948.4At2g44900819099armadillo/beta-catenin repeat family protein / F-box family proteinARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.S.X.H.G.
0.3948.4At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
122.299.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
91.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
72.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.399.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
13.599.4E-MEXP-1443-raw-cel-1581869745
12.099.3GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.999.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.999.2GSM176878AWP_AL_Txed_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.699.2GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
10.499.2E-MEXP-1443-raw-cel-1581869803
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.052e-242At5g67340836869armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFBC.G.S.X.
0.018e-240At5g65490836674-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAC.G.S.X.
0.038e-240At3g54790824644armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVC.G.S.X.
0.013e-138At1g60500842345dynamin family proteinF:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.011e+036Atmg00680--hypothetical proteinC.G.S.X.
0.011e+036At5g65960836726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.011e+036At5g54820835572F-box family proteinF:unknown;P:unknown;C:endomembrane system;PMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-33145Glycine maxGmaAffx.75492.1.S1_atBG507702--4e-34At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.084e-859Hordeum vulgareContig11953_atContig11953--5e-8At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.063e-965Oryza sativaOs01g0884400AK072566.1-The start codon is not identified.2e-9At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.121e-26123Populus trichocarpaPtpAffx.205382.1.S1_atpmrna10654hypothetical protein-6e-27At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.052e-552Triticum aestivumTa.16784.1.S1_atCA612578--4e-6At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.022e+034Vitis vinifera1612806_atCA814605--2e+0At4g13195CLE44 (CLAVATA3/ESR-RELATED 44)C.G.S.X.
0.072e-1067Zea maysZm.4163.1.A1_atAA979865--1e-10At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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