CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22860

Gene name ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. S.X. H.G.
0.38 46.7 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.29 30.3 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV S.X. H.G.
0.28 30.3 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.27 26.2 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA S.X. H.G.
0.27 26.2 At5g65300 836655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.26 24.4 At2g41010 818701 ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA) Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress. S.X. H.G.
0.25 22.6 At5g44350 834461 ethylene-responsive nuclear protein -related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.24 20.7 At1g66400 842958 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV S.X. H.G.
0.24 20.7 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.8 99.9 GSM184635 Arabidopsis, root cells, 140 mM NaCl, replicate 2 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
86.0 99.9 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
69.9 99.9 GSM142652 MC002_ATH1_A10.3-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
66.4 99.8 GSM142650 MC002_ATH1_A10.1-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
64.1 99.8 GSM142651 MC002_ATH1_A10.2-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
62.9 99.8 GSM218594 Whole roots 3.5hr KNO3 treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.8 99.8 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
62.6 99.8 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
59.3 99.8 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
58.2 99.8 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 38 At5g14280 831278 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:integral to membrane;POF C.G. S.X.
0.07 1e-1 36 At4g37720 829928 ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR) Probable phytosulfokines 6 precursor, coding for a unique plant peptide growth factor. C.G. S.X.
0.20 5e-1 34 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. C.G. S.X.
0.05 5e-1 34 At4g26288 5008166 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV C.G. S.X.
0.07 5e-1 34 At4g26290 828735 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.02 5e-1 34 At3g13160 820505 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA C.G. S.X.
0.07 5e-1 34 At2g22942 6240790 growth factor F:growth factor activity;P:cell proliferation;C:endomembrane system, extracellular region;P C.G. S.X.
0.02 5e-1 34 At1g26120 839153 esterase-related F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV C.G. S.X.
0.03 5e-1 34 At1g50980 841520 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PM C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 32 Glycine max GmaAffx.4880.1.S1_at AW567712 - - 6e-9 At2g23960 defense-related protein, putative C.G. S.X.
0.08 2e-1 34 Hordeum vulgare Contig15658_at Contig15658 - - 1e+0 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.03 2e-1 36 Oryza sativa Os04g0614700 AK058602.1 - Hypothetical protein 4e-1 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.07 5e-5 48 Populus trichocarpa PtpAffx.149533.2.S1_s_at BU879891 hypothetical protein - 8e-5 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.04 8e+0 30 Triticum aestivum TaAffx.77660.1.S1_at CA744568 - - 2e-1 At2g47610 60S ribosomal protein L7A (RPL7aA) C.G. S.X.
0.11 2e-6 50 Vitis vinifera 1617372_x_at CF201816.1 - - 1e-5 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.07 9e-4 42 Zea mays Zm.17838.1.S1_at CD999196 phytosulfokine precursor protein containing protein - 6e-3 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008283 The multiplication or reproduction of cells, resulting in the expansion of a cell population.
C GO:0009887 Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
C GO:0030154 The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage