CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22810

Gene name ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g22810 816812 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA). S.X. H.G.
0.52 67.4 At1g75470 843883 ATPUP15 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.47 61.2 At1g28220 839716 ATPUP3 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.46 59.8 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO S.X. H.G.
0.44 57.2 At1g49260 841350 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.42 53.9 At5g12240 831099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.31 33.8 At1g49930 841416 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At2g13510 815837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.28 30.3 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.28 30.3 At4g14590 827107 emb2739 (embryo defective 2739) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
383.8 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
279.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
84.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
77.3 99.9 GSM25875 IAA/A Treated - 3 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
69.7 99.9 GSM25863 IAA Treated - 2 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
66.2 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.5 99.8 GSM25877 IAA/B Treated - 2 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
54.5 99.8 GSM25862 IAA treated - 1 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 8e-84 311 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. C.G. S.X.
0.26 6e-20 99 At3g49700 824132 ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Mutants produce elevated levels of ethylene as etiolated seedlings. C.G. S.X.
0.29 2e-16 87 At5g65800 836709 ACS5 (ACC SYNTHASE 5) 1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition. C.G. S.X.
0.16 3e-12 73 At4g08040 826317 ACS11 encodes an aminotransferase that belongs to ACC synthase gene family structurally C.G. S.X.
0.05 3e-6 54 At5g51690 835243 ACS12 Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. C.G. S.X.
0.07 2e-4 48 At1g01480 837082 ACS2 a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. C.G. S.X.
0.11 7e-4 46 At4g11280 826730 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family C.G. S.X.
0.01 2e-1 38 At5g47560 834806 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) Encodes a tonoplast malate/fumarate transporter. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-12 73 Glycine max GmaAffx.24465.1.A1_at BU550824 - - 2e-12 At2g22810 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) C.G. S.X.
0.04 2e-6 54 Hordeum vulgare Contig21935_at Contig21935 - - 1e+0 At3g49700 ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) C.G. S.X.
0.03 9e-2 40 Oryza sativa Os.6034.1.S1_at - - - 0 C.G. S.X.
0.24 1e-12 75 Populus trichocarpa PtpAffx.211419.1.S1_at pmrna22376 1-aminocyclopropane-1-carboxylate - 1e-30 At3g49700 ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) C.G. S.X.
0.06 1e-2 42 Triticum aestivum TaAffx.70436.1.A1_at CD492161 - - 6e-3 At2g22810 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1622613_at CF510899 - - 2e-2 At4g02000 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.5712.1.A1_at AI637069 - - 1e+1 At5g19875 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
S GO:0009693 The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00030 Ethylene biosynthesis from methionine

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00270 Cysteine and methionine metabolism
01070 Biosynthesis of plant hormones
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