CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22760

Gene name basic helix-loop-helix (bHLH) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g22760 816806 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMA S.X. H.G.
1.00 100.0 At5g52050 835280 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM S.X. H.G.
0.80 89.8 At2g27310 817274 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV S.X. H.G.
0.60 75.7 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
763.0 100.0 E-MEXP-807-raw-cel-1173273252
639.1 100.0 E-MEXP-807-raw-cel-1173273170
484.8 100.0 E-MEXP-807-raw-cel-1173273144
469.2 100.0 E-MEXP-807-raw-cel-1173273060
406.8 100.0 E-MEXP-807-raw-cel-1173273116
358.8 100.0 E-MEXP-807-raw-cel-1173273223
319.9 100.0 E-MEXP-807-raw-cel-1173273196
285.1 100.0 E-MEXP-807-raw-cel-1173273088
121.6 99.9 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
111.0 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At2g27505 817296 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At5g53420 835423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 4e-1 36 At5g14090 831258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 4e-1 36 At4g27900 828903 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 4e-1 36 At3g51310 824294 VPS35C (VPS35 HOMOLOG C) Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. C.G. S.X.
0.01 2e+0 34 At5g17270 831592 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP C.G. S.X.
0.01 2e+0 34 At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max Gma.15770.1.A1_at CD407942 - - 6e-20 At5g26110 ATP binding / catalytic/ protein kinase C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HA06j10r_at HA06j10r - - 2e+0 At4g21920 unknown protein C.G. S.X.
0.02 9e-1 36 Oryza sativa OsAffx.18071.1.S1_at - - - 0 C.G. S.X.
0.03 6e-4 46 Populus trichocarpa PtpAffx.9579.1.S1_at DN487886 hypothetical protein - 3e-2 At4g37850 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.14757.1.S1_at CA681525 - - 4e+0 At2g29400 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614981_at CB345134 - - 9e-1 At3g08000 RNA-binding protein, putative C.G. S.X.
0.02 3e+0 32 Zea mays Zm.5851.6.S1_x_at L46399.1 MADS box protein - 2e-8 At4g18960 AG (AGAMOUS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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