CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22370

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g22370 816769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.22 17.5 At4g17420 827453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAPF S.X. H.G.
0.10 3.4 At1g34350 840336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.09 2.8 At3g12180 820395 cornichon family protein F:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPO S.X. H.G.
0.06 1.4 At3g22590 821831 RNA pol II accessory factor Cdc73 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.6 99.8 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
19.5 99.6 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.2 99.5 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
16.8 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.4 99.5 GSM133771 Lindsey_1-23_torpedo-apical_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.0 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.5 99.5 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
14.5 99.4 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.3 99.4 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
14.2 99.4 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At4g35730 829726 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MPFO C.G. S.X.
0.01 3e-1 36 At4g24890 828591 PAP24 (PURPLE ACID PHOSPHATASE 24) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMF C.G. S.X.
0.02 3e-1 36 At2g46880 819301 PAP14 (PURPLE ACID PHOSPHATASE 14) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO C.G. S.X.
0.02 1e+0 34 At5g50115 835076 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 1e+0 34 At4g22380 828333 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein F:RNA binding;P:ribosome biogenesis;C:nucleolus;MOAFPB C.G. S.X.
0.01 1e+0 34 At3g16260 820872 TRZ4 (TRNASE Z 4) Encodes a tRNase Z. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 5e-10 65 Glycine max GmaAffx.85137.1.S1_at AW458419 - - 6e-10 At2g22370 unknown protein C.G. S.X.
0.06 1e-2 40 Hordeum vulgare Contig23389_at Contig23389 - - 2e-2 At2g22370 unknown protein C.G. S.X.
0.11 2e-10 67 Oryza sativa Os02g0193900 AK069578.1 - Conserved hypothetical protein 2e-10 At2g22370 unknown protein C.G. S.X.
0.48 7e-31 135 Populus trichocarpa Ptp.2112.1.S1_at CV273029 hypothetical protein - 8e-31 At2g22370 unknown protein C.G. S.X.
0.06 6e-9 61 Triticum aestivum TaAffx.8051.1.S1_at BQ482848 - - 9e-9 At2g22370 unknown protein C.G. S.X.
0.07 3e-8 57 Vitis vinifera 1615066_at BQ792737 hypothetical protein LOC100250557 - 7e-8 At2g22370 unknown protein C.G. S.X.
0.08 2e-6 52 Zea mays Zm.6435.1.A1_at BM078602 hypothetical protein LOC100217154 - 1e-5 At2g22370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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