Gene omics information

Query gene ID At2g22330
Gene name CYP79B3
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.S.X.H.G.
0.5065.3At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.S.X.H.G.
0.2522.6At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.S.X.H.G.
0.030.6At1g066408371732-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseS.X.H.G.
0.010.2At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.599.9GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
67.299.8GSM183515ATR1_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
58.999.8GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
44.399.8GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
32.999.7GSM291114root - 21% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
32.899.7GSM291023root - 08% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
31.499.7GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
30.299.7GSM157363Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescence
29.599.7GSM131643ATGE_2_AGSE5633AtGenExpress: Developmental series (shoots and stems)
28.599.7GSM157362Ulker_2-5_WRKY-KO-40-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescence
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.730926At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.C.G.S.X.
0.044e-963At1g79370844275CYP79C1member of CYP79CC.G.S.X.
0.018e-136At5g05260830408CYP79A2 (CYTOCHROME P450 79A2)Encodes cytochrome P450 CYP79A2.C.G.S.X.
0.038e-136At5g35917833580CYP79A3Pa pseudogene with cytochrome P450 domainC.G.S.X.
0.018e-136At4g18375827566KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.018e-136At3g02870821206VTC4Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.45122.1.S1_atAW279158--3e-1At5g54580RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.024e-136Hordeum vulgareContig16568_s_atContig16568--1e+0At1g49110unknown proteinC.G.S.X.
0.031e-450Oryza sativaOs03g0570100AK119569.1-Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr)9e-1At5g35917CYP79A3PC.G.S.X.
0.043e-448Populus trichocarpaPtpAffx.203842.1.S1_atpmrna7585cytochrome P450-2e-4At2g22330CYP79B3C.G.S.X.
0.028e-136Triticum aestivumTa.359.1.S1_a_atBJ263340--3e-7At3g01150PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)C.G.S.X.
0.022e-136Vitis vinifera1610778_atBQ800015--2e+0Atcg00440-C.G.S.X.
0.016e+032Zea maysZm.6849.1.A1_atAI065467hypothetical protein LOC100275227-4e+0At5g01380transcription factorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0052544Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0009684The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants.
XGO:0006569The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
SGO:0010120The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
SGO:0019761The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00055Link to KaPPA-View 4Auxin biosynthesis
00347Link to KaPPA-View 4Cytochrome P450
00405Link to KaPPA-View 4Glucosinolate biosynthesis from Trp, Phe, Leu and Val



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00380Link to KEGG PATHWAYTryptophan metabolism
00966Link to KEGG PATHWAYGlucosinolate biosynthesis
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