CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22200

Gene name AP2 domain-containing transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g22200 816754 AP2 domain-containing transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. S.X. H.G.
0.03 0.6 At3g59050 825074 ATPAO3 (Polyamine oxidase 3) F:polyamine oxidase activity;P:polyamine catabolic process;C:peroxisome;BMOFPA S.X. H.G.
0.02 0.4 At1g24625 839077 ZFP7 (ZINC FINGER PROTEIN 7) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.01 0.2 At4g00150 828208 scarecrow-like transcription factor 6 (SCL6) F:transcription factor activity;P:regulation of transcription;C:chloroplast;PB S.X. H.G.
0.01 0.2 At5g60120 836134 TOE2 F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBV S.X. H.G.
0.00 0.0 At4g21790 828267 TOM1 (TOBAMOVIRUS MULTIPLICATION 1) encodes a host factor that is required for TMV virus multiplication. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
276.9 100.0 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
237.7 100.0 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
172.0 100.0 GSM128655 Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
88.7 99.9 GSM157363 Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
64.9 99.8 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
59.0 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
57.9 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.8 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
49.2 99.8 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
47.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 2e-24 113 At4g39780 830136 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.12 8e-18 91 At1g36060 840510 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.08 5e-13 75 At1g78080 844143 RAP2.4 (related to AP2 4) encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. C.G. S.X.
0.11 1e-7 57 At2g20880 816622 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV C.G. S.X.
0.16 4e-7 56 At5g65130 836637 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.07 4e-4 46 At3g23240 821902 ERF1 (ETHYLENE RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3. C.G. S.X.
0.04 2e-3 44 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. C.G. S.X.
0.07 3e-2 40 At5g61890 836310 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
0.03 3e-2 40 At4g13620 826996 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-3 44 Glycine max Gma.8896.1.S1_at BQ252812 - - 2e-3 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.03 1e-2 40 Hordeum vulgare HVSMEi0011H23r2_at HVSMEi0011H23r2 - - 9e-1 At1g31380 - C.G. S.X.
0.08 5e-8 59 Oryza sativa Os06g0222400 AK063886.1 - Hypothetical protein 2e-3 At5g46780 VQ motif-containing protein C.G. S.X.
0.13 7e-22 105 Populus trichocarpa PtpAffx.21486.2.S1_a_at CV254073 - - 8e-27 At4g39780 AP2 domain-containing transcription factor, putative C.G. S.X.
0.09 4e-4 46 Triticum aestivum TaAffx.77891.1.S1_at CA741204 - - 3e-4 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.04 5e-4 44 Vitis vinifera 1609629_at CF606022 hypothetical protein LOC100250476 - 3e-17 At5g13330 Rap2.6L (related to AP2 6L) C.G. S.X.
0.07 4e-5 48 Zea mays Zm.10842.1.S1_a_at AF493800.1 DRE binding factor 1 - 1e-4 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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