CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g22090

Gene name UBP1 interacting protein 1a (UBA1a)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At2g22090 816744 UBP1 interacting protein 1a (UBA1a) encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. S.X. H.G.
0.67 81.6 At1g72175 843549 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV S.X. H.G.
0.43 55.3 At3g04970 819657 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP S.X. H.G.
0.32 35.7 At5g64813 836603 LIP1 (Light Insensitive Period1) The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. S.X. H.G.
0.31 33.8 At3g19460 821480 reticulon family protein (RTNLB11) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.1 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.4 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.3 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.0 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.3 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.3 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.0 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.9 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.3 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-1 38 At5g54580 835546 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA C.G. S.X.
0.01 5e-1 36 At3g07530 819942 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFAB C.G. S.X.
0.02 2e+0 34 At5g18810 831999 SCL28 encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. C.G. S.X.
0.01 2e+0 34 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. C.G. S.X.
0.02 2e+0 34 At3g04360 819591 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At3g09240 820080 protein kinase-related F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA C.G. S.X.
0.03 8e+0 32 At5g12236 6240629 unknown protein F:unknown;P:unknown;C:endomembrane system C.G. S.X.
0.03 8e+0 32 At5g50801 6240737 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.68810.2.S1_at BQ611057 - - 2e-45 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig25564_at Contig25564 - - 7e-1 At3g30220 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.6347.1.S1_at - - - 0 C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.214996.1.S1_at pmrna28934 hypothetical protein - 2e-1 At2g22090 UBP1 interacting protein 1a (UBA1a) C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.52905.1.S1_x_at CA699169 - - 2e-1 At2g22090 UBP1 interacting protein 1a (UBA1a) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1608382_at CF405318 - - 4e+0 At5g54215 - C.G. S.X.
0.02 3e+0 32 Zea mays Zm.12248.3.A1_at AI770379 Hypothetical protein LOC100216999 - 3e+0 At5g65660 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0048255 Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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