Gene omics information

Query gene ID At2g22090
Gene name UBP1 interacting protein 1a (UBA1a)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At2g22090816744UBP1 interacting protein 1a (UBA1a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.S.X.H.G.
0.6781.6At1g72175843549zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVS.X.H.G.
0.4355.3At3g04970819657zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPS.X.H.G.
0.3235.7At5g64813836603LIP1 (Light Insensitive Period1)The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.S.X.H.G.
0.3133.8At3g19460821480reticulon family protein (RTNLB11)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.199.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.399.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.999.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-138At5g54580835546RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAC.G.S.X.
0.015e-136At3g07530819942unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFABC.G.S.X.
0.022e+034At5g18810831999SCL28encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks.C.G.S.X.
0.012e+034At4g21270827876ATK1 (ARABIDOPSIS THALIANA KINESIN 1)Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.C.G.S.X.
0.022e+034At3g04360819591-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At3g09240820080protein kinase-relatedF:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVAC.G.S.X.
0.038e+032At5g122366240629unknown proteinF:unknown;P:unknown;C:endomembrane systemC.G.S.X.
0.038e+032At5g508016240737unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxGmaAffx.68810.2.S1_atBQ611057--2e-45At4g02930elongation factor Tu, putative / EF-Tu, putativeC.G.S.X.
0.024e+032Hordeum vulgareContig25564_atContig25564--7e-1At3g30220unknown proteinC.G.S.X.
0.021e+036Oryza sativaOsAffx.6347.1.S1_at---0C.G.S.X.
0.037e-136Populus trichocarpaPtpAffx.214996.1.S1_atpmrna28934hypothetical protein-2e-1At2g22090UBP1 interacting protein 1a (UBA1a)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.52905.1.S1_x_atCA699169--2e-1At2g22090UBP1 interacting protein 1a (UBA1a)C.G.S.X.
0.032e+032Vitis vinifera1608382_atCF405318--4e+0At5g54215-C.G.S.X.
0.023e+032Zea maysZm.12248.3.A1_atAI770379Hypothetical protein LOC100216999-3e+0At5g65660hydroxyproline-rich glycoprotein family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0048255Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

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