CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21900

Gene name WRKY59

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At2g21900 816726 WRKY59 member of WRKY Transcription Factor; Group II-c S.X. H.G.
0.72 84.8 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.68 82.2 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.65 79.6 At2g27310 817274 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.65 79.6 At3g08720 820019 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. S.X. H.G.
0.65 79.6 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV S.X. H.G.
0.64 78.9 At5g12340 831109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.64 78.9 At2g22760 816806 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMA S.X. H.G.
0.63 78.1 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.63 78.1 At4g28703 828989 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
509.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
343.4 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
317.1 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
215.7 100.0 E-MEXP-807-raw-cel-1173273144
200.1 100.0 E-MEXP-807-raw-cel-1173273252
137.3 99.9 E-MEXP-807-raw-cel-1173273196
131.9 99.9 E-MEXP-807-raw-cel-1173273088
128.9 99.9 GSM131273 AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
115.4 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
113.1 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-2 40 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. C.G. S.X.
0.03 7e-2 38 At5g08410 830739 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO C.G. S.X.
0.03 7e-2 38 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d C.G. S.X.
0.02 7e-2 38 At5g56270 835726 WRKY2 WRKY transcription factor 2 C.G. S.X.
0.02 7e-2 38 At3g13810 820593 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB C.G. S.X.
0.01 3e-1 36 At5g55820 835676 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 3e-1 36 At5g51330 835207 SWI1 (SWITCH1) Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-4 46 Glycine max GmaAffx.91389.1.S1_x_at CF807114 WRKY39 protein - 1e-14 At5g07100 WRKY26 C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig8764_at Contig8764 - - 1e-1 At1g62333 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os07g0269600 9635.m01680 - - 2e+0 At1g56580 unknown protein C.G. S.X.
0.06 2e-3 44 Populus trichocarpa PtpAffx.206248.1.S1_at pmrna12398 hypothetical protein - 1e-3 At1g29860 WRKY71 C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.59832.1.S1_s_at CA594695 - - 9e+0 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) C.G. S.X.
0.04 9e-2 36 Vitis vinifera 1622778_at BQ797582 WRKY-type DNA binding protein 1 - 5e-22 At5g13080 WRKY75 C.G. S.X.
0.03 5e-1 34 Zea mays Zm.7572.3.S1_a_at AY105700.1 COP9 signalosome complex subunit 7 - 3e-1 At1g02090 FUS5 (FUSCA 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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