CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21730

Gene name CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At2g21730 816710 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV S.X. H.G.
0.87 93.5 At5g12060 831079 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At3g24790 822077 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.74 86.1 At3g17080 820965 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.74 86.1 At5g58820 835999 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM S.X. H.G.
0.71 84.2 At2g43660 818968 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.70 83.5 At3g02670 821280 proline-rich family protein F:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVA S.X. H.G.
0.57 73.8 At1g11070 837648 - F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA S.X. H.G.
0.56 73.0 At5g26650 832724 AGL36 (AGAMOUS-LIKE 36) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO S.X. H.G.
0.55 70.6 At4g35725 829725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
427.7 100.0 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
400.5 100.0 GSM311277 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
198.2 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
176.1 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
174.8 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.1 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
158.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
156.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.1 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
136.6 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.99 0 2103 At2g21890 816725 CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.64 1e-57 224 At4g39330 830088 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:apoplast;BOPFMAV C.G. S.X.
0.03 4e-5 50 At4g34230 829572 ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. C.G. S.X.
0.01 1e-1 38 At5g15280 831380 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.02 1e-1 38 At5g63620 836482 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.03 1e-1 38 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-1 36 Glycine max Gma.1545.2.S1_at BG239480 - - 2e-9 At4g39330 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig7292_s_at Contig7292 - - 3e+0 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.05 2e-2 42 Oryza sativa Os04g0229100 AK071484.1 - Cinnamyl-alcohol dehydrogenase CAD1 (Putativealcohol dehydrogenase) (EC 1.1.1.195) 1e-2 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
0.13 1e-11 71 Populus trichocarpa Ptp.2525.1.S1_at AY126444.1 cinnamyl alcohol dehydrogenase-like protein - 9e-16 At4g39330 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) C.G. S.X.
0.05 2e-3 44 Triticum aestivum Ta.6747.1.S1_at CA730395 - - 3e-3 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
0.04 4e-5 48 Vitis vinifera 1607417_at CF512464 hypothetical protein LOC100245522 - 1e-4 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
0.07 2e-5 50 Zea mays Zm.2631.1.S1_at AY107698.1 hypothetical protein LOC100191885 - 5e-5 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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