Gene omics information

Query gene ID At2g21660
Gene name CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At2g21660816705CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).S.X.H.G.
0.4050.8At1g51610841586cation efflux family protein / metal tolerance protein, putative (MTPc4)F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAPS.X.H.G.
0.3338.1At2g28900817439ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.S.X.H.G.
0.3032.1At2g22450816777riboflavin biosynthesis protein, putativeF:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAPS.X.H.G.
0.3032.1At5g64860836609DPE1 (DISPROPORTIONATING ENZYME)Encodes a maltotriose-metabolizing enzyme with chloroplastic α-1,4-glucanotransferase activity. Mutant has altered starch degradation.S.X.H.G.
0.2930.3At1g69830843319AMY3 (ALPHA-AMYLASE-LIKE 3)Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.S.X.H.G.
0.2930.3At5g26570832706ATGWD3chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.S.X.H.G.
0.2319.3At5g61380836259TOC1 (TIMING OF CAB EXPRESSION 1)Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.S.X.H.G.
0.1811.4At2g31360817694ADS2 (16:0Delta9 Arabidopsis desaturase 2)homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.S.X.H.G.
0.1710.2At4g18520827584-F:unknown;P:biological_process unknown;C:unknown;POMFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.399.0E-MEXP-849-raw-cel-1181980862
8.098.9E-TABM-52-raw-cel-1583683630
7.798.9E-MEXP-173-raw-cel-357965520
7.698.9E-MEXP-173-raw-cel-357965384
7.498.8E-MEXP-173-raw-cel-357965350
7.098.7E-TABM-52-raw-cel-1583682862
6.998.7GSM156790control rep1GSE6788Expression data of an albino mutant DS 13-2198-1
6.198.5E-TABM-209-raw-cel-1316546487
6.198.5E-TABM-52-raw-cel-1583682942
6.098.5GSM156791albino rep1GSE6788Expression data of an albino mutant DS 13-2198-1
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.491e-49196At4g39260830082GR-RBP8Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).C.G.S.X.
0.137e-548At4g13850827019GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.322e-1273Glycine maxGmaAffx.90323.1.A1_s_atCF806048--4e-7At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.078e-340Hordeum vulgareContig1025_s_atContig1025--3e-2At3g48180unknown proteinC.G.S.X.
0.198e-342Oryza sativaOs12g0632000BI797959-Glycine-rich RNA-binding protein GRP1A8e-1At5g40970unknown proteinC.G.S.X.
0.213e-1169Populus trichocarpaPtp.5864.3.A1_atDN494422--2e-6At4g39260GR-RBP8C.G.S.X.
0.067e-238Triticum aestivumTa.23397.2.S1_x_atCA718270--1e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.121e-652Vitis vinifera1621554_s_atCF511998similar to Os03g0670700-4e-6At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.073e-548Zea maysZm.13944.6.S1_a_atAI795502glycine-rich RNA-binding protein 8-9e-10At3g26420ATRZ-1AC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
XGO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
XGO:0006406The directed movement of mRNA from the nucleus to the cytoplasm.
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0010119Any process that modulates the frequency, rate or extent of stomatal movement.
XGO:0010501The process by which a secondary structure of RNA are broken or 'melted'.
XGO:0032508The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0007623Any biological process in an organism that recurs with a regularity of approximately 24 hours.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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