CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21640

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. S.X. H.G.
0.86 93.1 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.77 88.0 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM S.X. H.G.
0.60 75.7 At1g74870 843826 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB S.X. H.G.
0.58 73.8 At2g04070 814943 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.56 73.0 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO S.X. H.G.
0.53 68.6 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase S.X. H.G.
0.52 67.4 At1g05680 837075 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.52 67.4 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.51 66.3 At2g20720 816600 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
180.4 100.0 E-MEXP-807-raw-cel-1173272948
170.1 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
158.5 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
137.0 99.9 GSM253200 Nontransgenic(ga1-3rgargl2)-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
119.5 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
111.9 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
100.9 99.9 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
77.7 99.9 GSM131400 AtGen_6-7412_UV-Bstress-Shoots-6.0h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
75.9 99.9 GSM134421 St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
75.6 99.9 GSM131399 AtGen_6-7411_UV-Bstress-Shoots-6.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.41 3e-15 81 At4g39235 830079 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.25 2e-6 52 At3g05570 819723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 34 At5g53020 835381 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.02 6e-1 34 At5g62550 836375 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMBFPVA C.G. S.X.
0.04 6e-1 34 At4g02430 828027 pre-mRNA splicing factor, putative / SR1 protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA C.G. S.X.
0.02 6e-1 34 At4g00110 828145 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. C.G. S.X.
0.03 6e-1 34 At4g09870 826576 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-2 38 Glycine max GmaAffx.92571.1.A1_at CF808296 - - 2e-5 At3g05570 unknown protein C.G. S.X.
0.06 5e+0 30 Hordeum vulgare HT11K16u_s_at HT11K16u - - 9e-2 At5g40330 MYB23 (MYB DOMAIN PROTEIN 23) C.G. S.X.
0.08 5e-6 52 Oryza sativa Os.8987.1.S1_at - - - 0 C.G. S.X.
0.10 9e-7 54 Populus trichocarpa PtpAffx.24581.1.A1_s_at CV255180 hypothetical protein - 4e-16 At4g39235 unknown protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.31383.1.S1_at CA616853 - - 4e+0 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 2e-4 44 Vitis vinifera 1610015_at CB350036 hypothetical protein LOC100264110 - 9e-2 At3g05570 unknown protein C.G. S.X.
0.07 7e-5 46 Zea mays Zm.10216.1.A1_at CD440291 hypothetical protein LOC100276703 - 7e-9 At3g05570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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