CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21590

Gene name APL4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At2g21590 816697 APL4 Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described. S.X. H.G.
0.80 89.8 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO S.X. H.G.
0.61 76.7 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV S.X. H.G.
0.60 75.7 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.46 59.8 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV S.X. H.G.
0.44 57.2 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.40 50.8 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
501.7 100.0 E-MEXP-1443-raw-cel-1581869515
314.7 100.0 E-MEXP-1443-raw-cel-1581869573
165.6 100.0 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
127.7 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
124.4 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
116.5 99.9 GSM128706 Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
113.8 99.9 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
110.6 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.1 99.9 GSM260955 A2-LLOYD-PHO_REP2 GSE10326 Transcriptome analysis of pho3
93.0 99.9 GSM260953 A1-LLOYD-PHO_REP1 GSE10326 Transcriptome analysis of pho3
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 1136 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. C.G. S.X.
0.24 9e-13 75 At1g27680 839660 APL2 (ADPGLC-PPASE LARGE SUBUNIT) ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. C.G. S.X.
0.13 2e-4 48 At5g19220 832042 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. C.G. S.X.
0.01 2e-1 38 At5g28680 832975 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-1 38 At1g23390 838947 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 8e-1 36 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB C.G. S.X.
0.01 8e-1 36 At3g12970 820483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
0.01 8e-1 36 At2g16750 816176 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 5e-40 167 Glycine max Gma.18079.1.S1_s_at AI856264 - - 1e-40 At2g21590 APL4 C.G. S.X.
0.12 1e-13 77 Hordeum vulgare Contig3390_at Contig3390 - - 5e-9 At1g27680 APL2 (ADPGLC-PPASE LARGE SUBUNIT) C.G. S.X.
0.10 5e-13 77 Oryza sativa Os07g0243200 NM_186821.1 - ADP-glucose pyrophosphorylase (EC 2.7.7.27)(Fragment) 5e-8 At1g27680 APL2 (ADPGLC-PPASE LARGE SUBUNIT) C.G. S.X.
0.49 5e-46 186 Populus trichocarpa PtpAffx.204229.1.S1_at pmrna8317 hypothetical protein - 3e-46 At2g21590 APL4 C.G. S.X.
0.12 9e-13 75 Triticum aestivum Ta.2797.1.S1_x_at BJ242477 ADP-glucose pyrophosophorylase preprotein - 1e-12 At2g21590 APL4 C.G. S.X.
0.26 8e-23 107 Vitis vinifera 1608393_at CF403620 - - 2e-22 At2g21590 APL4 C.G. S.X.
0.07 2e-8 59 Zea mays Zm.329.2.S1_a_at S48563.1 shrunken-2 locus - 1e-9 At1g27680 APL2 (ADPGLC-PPASE LARGE SUBUNIT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0019252 The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00001 Starch biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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