Gene omics information

Query gene ID At2g21590
Gene name APL4
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At2g21590816697APL4Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.S.X.H.G.
0.8089.8At3g13672820573seven in absentia (SINA) family proteinF:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPOS.X.H.G.
0.6176.7At2g41190818718amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAVS.X.H.G.
0.6075.7At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBS.X.H.G.
0.4659.8At1g07430837255protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVS.X.H.G.
0.4457.2At5g15190831371unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.4050.8At2g25625817103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
501.7100.0E-MEXP-1443-raw-cel-1581869515
314.7100.0E-MEXP-1443-raw-cel-1581869573
165.6100.0GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
127.799.9GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
124.499.9GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
116.599.9GSM128706Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1GSE5523Environmental Genomics of Calcicole-calcifuge physiology
113.899.9GSM131304AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
110.699.9GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.199.9GSM260955A2-LLOYD-PHO_REP2GSE10326Transcriptome analysis of pho3
93.099.9GSM260953A1-LLOYD-PHO_REP1GSE10326Transcriptome analysis of pho3
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7601136At4g39210830076APL3Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.C.G.S.X.
0.249e-1375At1g27680839660APL2 (ADPGLC-PPASE LARGE SUBUNIT)ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.C.G.S.X.
0.132e-448At5g19220832042APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.C.G.S.X.
0.012e-138At5g28680832975protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e-138At1g23390838947kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.018e-136At5g47980834849transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFBC.G.S.X.
0.018e-136At3g12970820483unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBVC.G.S.X.
0.018e-136At2g16750816176protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.275e-40167Glycine maxGma.18079.1.S1_s_atAI856264--1e-40At2g21590APL4C.G.S.X.
0.121e-1377Hordeum vulgareContig3390_atContig3390--5e-9At1g27680APL2 (ADPGLC-PPASE LARGE SUBUNIT)C.G.S.X.
0.105e-1377Oryza sativaOs07g0243200NM_186821.1-ADP-glucose pyrophosphorylase (EC 2.7.7.27)(Fragment)5e-8At1g27680APL2 (ADPGLC-PPASE LARGE SUBUNIT)C.G.S.X.
0.495e-46186Populus trichocarpaPtpAffx.204229.1.S1_atpmrna8317hypothetical protein-3e-46At2g21590APL4C.G.S.X.
0.129e-1375Triticum aestivumTa.2797.1.S1_x_atBJ242477ADP-glucose pyrophosophorylase preprotein-1e-12At2g21590APL4C.G.S.X.
0.268e-23107Vitis vinifera1608393_atCF403620--2e-22At2g21590APL4C.G.S.X.
0.072e-859Zea maysZm.329.2.S1_a_atS48563.1shrunken-2 locus-1e-9At1g27680APL2 (ADPGLC-PPASE LARGE SUBUNIT)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0019252The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00001Link to KaPPA-View 4Starch biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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