CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21540

Gene name SFH3 (SEC14-LIKE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g21540 816693 SFH3 (SEC14-LIKE 3) F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFO S.X. H.G.
0.84 91.9 At3g19310 821465 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM S.X. H.G.
0.83 91.4 At2g33460 817911 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. S.X. H.G.
0.82 90.9 At1g50610 841483 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.81 90.4 At1g01310 839333 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFOB S.X. H.G.
0.81 90.4 At3g43860 823499 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF S.X. H.G.
0.81 90.4 At1g02000 839289 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-D-glucuronate 4-epimerase S.X. H.G.
0.80 89.8 At4g03290 827993 calcium-binding protein, putative F:calcium ion binding;P:response to cold;C:nucleus;MFPOB S.X. H.G.
0.80 89.8 At1g25240 839107 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAO S.X. H.G.
0.80 89.8 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.8 99.9 E-MEXP-1138-raw-cel-1432772746
133.3 99.9 E-MEXP-1138-raw-cel-1432773002
124.5 99.9 E-MEXP-1138-raw-cel-1432772810
120.5 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
115.7 99.9 E-MEXP-1138-raw-cel-1432773226
112.4 99.9 E-MEXP-1138-raw-cel-1432773034
109.5 99.9 E-MEXP-1138-raw-cel-1432772874
109.2 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
109.0 99.9 E-MEXP-1138-raw-cel-1432772714
108.7 99.9 E-MEXP-1138-raw-cel-1432773130
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 0 676 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.34 4e-86 319 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.34 2e-63 244 At4g36490 829801 SFH12 (SEC14-LIKE 12) F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.39 3e-59 230 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. C.G. S.X.
0.11 8e-32 139 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.15 7e-26 119 At1g75370 843873 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative F:transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
0.30 7e-23 109 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 1e-43 178 Glycine max GmaAffx.89158.1.A1_at CK605958 - - 4e-44 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.06 4e-1 36 Hordeum vulgare Contig8148_at Contig8148 - - 2e-2 At2g16380 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.18 5e-19 97 Oryza sativa Os02g0440900 9630.m02277 - Phosphatidylinositol transfer-like protein II 3e-28 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.39 8e-45 182 Populus trichocarpa PtpAffx.225680.1.S1_at pmrna45207 hypothetical protein - 2e-103 At4g36490 SFH12 (SEC14-LIKE 12) C.G. S.X.
0.08 2e-1 38 Triticum aestivum Ta.9791.2.S1_at BJ312711 - - 2e-2 At3g24840 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.09 6e-2 38 Vitis vinifera 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.14 9e-5 48 Zea mays Zm.8497.1.A1_at CF631368 hypothetical protein LOC100274573 - 3e-4 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009908 The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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