CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21195

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
1.00 100.0 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
1.00 100.0 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
0.97 97.6 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.97 97.6 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
0.97 97.6 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. S.X. H.G.
0.97 97.6 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.97 97.6 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1129.6 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.4 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
41.2 99.8 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
35.1 99.7 GSM173443 wild-type Arabidopsis, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
35.0 99.7 GSM173442 wild-type Arabidopsis, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
34.6 99.7 GSM173446 oxt6 mutant, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
34.2 99.7 GSM173445 oxt6 mutant, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
30.2 99.7 GSM173444 wild-type Arabidopsis, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
28.0 99.7 GSM62698 arf6/arf6 ARF8/arf8 flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
26.6 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-2 38 At5g38440 833832 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.04 3e-2 38 At1g52155 841646 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.02 5e-1 34 At5g66180 836750 - F:unknown;P:unknown;C:cellular_component unknown;BOMAFP C.G. S.X.
0.03 5e-1 34 At5g48790 834937 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO C.G. S.X.
0.05 5e-1 34 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 32 Glycine max GmaAffx.61503.1.A1_at CD412284 - - 3e+0 At2g21195 unknown protein C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HW05M23u_at HW05M23u - - 2e+0 At2g21195 unknown protein C.G. S.X.
0.04 3e-1 36 Oryza sativa OsAffx.2382.1.S1_x_at - - - 0 C.G. S.X.
0.14 2e-10 65 Populus trichocarpa Ptp.4438.1.S1_s_at CV275339 hypothetical protein - 4e-10 At2g21195 unknown protein C.G. S.X.
0.06 2e+0 32 Triticum aestivum TaAffx.104719.1.S1_at CA745665 - - 2e+0 At2g21195 unknown protein C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1616063_at BQ796274 hypothetical protein LOC100249892 - 3e-17 At4g17300 NS1 C.G. S.X.
0.03 4e+0 30 Zea mays Zm.18781.1.A1_at CO525693 fructose-1,6-bisphosphatase - 8e-5 At5g64380 fructose-1,6-bisphosphatase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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