Gene omics information

Query gene ID At2g21170
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At2g21170816652TIM (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.S.X.H.G.
0.8290.9At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMS.X.H.G.
0.8190.4At3g52150824379RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBAS.X.H.G.
0.8089.8At2g43030818905ribosomal protein L3 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFPS.X.H.G.
0.7989.1At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPS.X.H.G.
0.7788.0At3g54210824588ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFPS.X.H.G.
0.7788.0At1g07320837243RPL4encodes a plastid ribosomal protein L4S.X.H.G.
0.7788.0At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFS.X.H.G.
0.7788.0At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMS.X.H.G.
0.7687.4At1g3568084047250S ribosomal protein L21, chloroplast / CL21 (RPL21)F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.397.7GSM133251RIKEN-GODA10A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
4.397.7GSM133264RIKEN-GODA3B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
4.297.6GSM133256RIKEN-GODA12B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
4.297.6GSM133269RIKEN-GODA6A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
4.297.6GSM269490mkk2, no-treatment, rep-CGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.097.5GSM133274RIKEN-GODA8B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.028e-342At4g09010826480APX4 (ASCORBATE PEROXIDASE 4)Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.C.G.S.X.
0.028e-342At3g07050819890GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAVC.G.S.X.
0.028e-342At3g06020819773unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBAC.G.S.X.
0.018e-342At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.C.G.S.X.
0.033e-240At3g29075822552glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.021e-138At5g639908365203'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:cellular_component unknown;BOFPMAC.G.S.X.
0.011e-138At5g61150836236VIP4 (VERNALIZATION INDEPENDENCE 4)Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.571e-100367Glycine maxGma.3128.1.S1_atBF423969--1e-100At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.404e-1581Hordeum vulgareContig6111_atContig6111--1e-14At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.164e-1583Oryza sativaOs09g0535000AK069832.1-Triosephosphate isomerase, chloroplast precursor(EC (TIM) (Triose-phosphate isomerase)5e-15At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.588e-90331Populus trichocarpaPtp.6473.1.S1_s_atCV282875hypothetical protein-7e-90At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.259e-1271Triticum aestivumTa.4315.1.S1_atCD879285--1e-11At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.542e-90331Vitis vinifera1617670_atCF211965hypothetical protein LOC100260576-8e-90At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.303e-1995Zea maysZm.17378.1.S1_atCK368467hypothetical protein LOC100193000-8e-19At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0019253The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00111Link to KaPPA-View 4Glycolysis/gluconeogenesis
00112Link to KaPPA-View 4Calvin cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00010Link to KEGG PATHWAYGlycolysis / Gluconeogenesis
00051Link to KEGG PATHWAYFructose and mannose metabolism
00562Link to KEGG PATHWAYInositol phosphate metabolism
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01100Link to KEGG PATHWAYMetabolic pathways
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