CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21170

Gene name TIM (TRIOSEPHOSPHATE ISOMERASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g21170 816652 TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. S.X. H.G.
0.82 90.9 At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM S.X. H.G.
0.81 90.4 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA S.X. H.G.
0.80 89.8 At2g43030 818905 ribosomal protein L3 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP S.X. H.G.
0.79 89.1 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP S.X. H.G.
0.77 88.0 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP S.X. H.G.
0.77 88.0 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 S.X. H.G.
0.77 88.0 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF S.X. H.G.
0.77 88.0 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM S.X. H.G.
0.76 87.4 At1g35680 840472 50S ribosomal protein L21, chloroplast / CL21 (RPL21) F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 98.0 E-MEXP-711-raw-cel-1563002537
4.7 98.0 E-ATMX-26-raw-cel-1441077097
4.4 97.8 E-MEXP-1443-raw-cel-1581869573
4.3 97.7 GSM133251 RIKEN-GODA10A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.3 97.7 GSM133264 RIKEN-GODA3B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.2 97.6 GSM133256 RIKEN-GODA12B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.2 97.6 GSM133269 RIKEN-GODA6A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.2 97.6 GSM269490 mkk2, no-treatment, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.0 97.5 E-MEXP-739-raw-cel-1099467348
4.0 97.5 GSM133274 RIKEN-GODA8B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-3 42 At4g09010 826480 APX4 (ASCORBATE PEROXIDASE 4) Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. C.G. S.X.
0.02 8e-3 42 At3g07050 819890 GTP-binding family protein F:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAV C.G. S.X.
0.02 8e-3 42 At3g06020 819773 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA C.G. S.X.
0.01 8e-3 42 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. C.G. S.X.
0.03 3e-2 40 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.02 1e-1 38 At5g63990 836520 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:cellular_component unknown;BOFPMA C.G. S.X.
0.01 1e-1 38 At5g61150 836236 VIP4 (VERNALIZATION INDEPENDENCE 4) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 1e-100 367 Glycine max Gma.3128.1.S1_at BF423969 - - 1e-100 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.40 4e-15 81 Hordeum vulgare Contig6111_at Contig6111 - - 1e-14 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.16 4e-15 83 Oryza sativa Os09g0535000 AK069832.1 - Triosephosphate isomerase, chloroplast precursor(EC 5.3.1.1) (TIM) (Triose-phosphate isomerase) 5e-15 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.58 8e-90 331 Populus trichocarpa Ptp.6473.1.S1_s_at CV282875 hypothetical protein - 7e-90 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.25 9e-12 71 Triticum aestivum Ta.4315.1.S1_at CD879285 - - 1e-11 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.54 2e-90 331 Vitis vinifera 1617670_at CF211965 hypothetical protein LOC100260576 - 8e-90 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.30 3e-19 95 Zea mays Zm.17378.1.S1_at CK368467 hypothetical protein LOC100193000 - 8e-19 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019253 The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00111 Glycolysis/gluconeogenesis
00112 Calvin cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00051 Fructose and mannose metabolism
00562 Inositol phosphate metabolism
00710 Carbon fixation in photosynthetic organisms
01100 Metabolic pathways
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