CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21160

Gene name translocon-associated protein alpha (TRAP alpha) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At2g21160 816651 translocon-associated protein alpha (TRAP alpha) family protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole;MPFO S.X. H.G.
0.67 81.6 At5g14030 831251 translocon-associated protein beta (TRAPB) family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPO S.X. H.G.
0.57 73.8 At4g24330 828536 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPB S.X. H.G.
0.50 65.3 At1g56330 842086 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. S.X. H.G.
0.29 30.3 At5g54750 835565 transport protein particle (TRAPP) component Bet3, putative F:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.2 99.4 GSM133981 Birnbaum_1-11_StageII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
12.0 99.3 GSM252669 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
10.9 99.2 GSM133980 Birnbaum_1-10_StageII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.7 99.2 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
10.5 99.2 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.4 99.2 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
10.3 99.2 GSM184841 Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.9 99.1 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.6 99.1 GSM252690 Section of Root from 270 mm to 340 mm harvested immediately rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
9.0 99.1 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At5g03670 831763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB C.G. S.X.
0.01 1e-1 38 At2g37010 818275 ATNAP12 member of NAP subfamily C.G. S.X.
0.01 1e-1 38 At2g32900 817851 ATZW10 homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation C.G. S.X.
0.07 1e-1 38 At2g16595 816160 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO C.G. S.X.
0.03 1e-1 38 At1g54215 841862 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA C.G. S.X.
0.01 4e-1 36 At5g66850 836819 MAPKKK5 member of MEKK subfamily C.G. S.X.
0.02 4e-1 36 At2g04880 815035 ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1) Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-7 56 Glycine max Gma.5782.1.S1_at CA852398 - - 7e-7 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.10 8e-4 44 Hordeum vulgare Contig3473_at Contig3473 - - 3e-3 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os06g0715500 AK100782.1 - Translocon-associated protein, alpha subunitprecursor (TRAP-alpha) (Signal sequence receptor alphasubunit) (SSR-alpha) 1e-2 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.26 2e-12 73 Populus trichocarpa Ptp.6692.1.S1_at CK109395 hypothetical protein - 2e-12 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.05 6e-3 42 Triticum aestivum Ta.28313.1.S1_at BJ293939 - - 1e-2 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.07 1e-1 36 Vitis vinifera 1618142_at CF201100.1 hypothetical protein LOC100250330 - 2e-5 At2g16595 - C.G. S.X.
0.07 7e-4 44 Zea mays Zm.1544.3.A1_a_at BG874097 hypothetical protein LOC100193254 /// hypothetical protein LOC100273641 - 2e-3 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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