CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g21045

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.84 91.9 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.81 90.4 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.81 90.4 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.76 87.4 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.75 86.9 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.71 84.2 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.64 78.9 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.60 75.7 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.0 99.7 E-MEXP-828-raw-cel-1156922708
35.9 99.7 E-MEXP-828-raw-cel-1156922533
35.1 99.7 E-MEXP-828-raw-cel-1156922794
35.1 99.7 GSM179970 Arabidopsis aux1 mutant roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.6 99.7 GSM157339 Coates_1-11_Col-3_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
30.5 99.7 E-MEXP-828-raw-cel-1156922829
30.4 99.7 E-MEXP-828-raw-cel-1156922923
30.3 99.7 E-MEXP-828-raw-cel-1156922772
30.2 99.7 GSM265464 Arabidopsis, whole roots, -Fe, 3 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
29.9 99.7 GSM179972 Arabidopsis roots, mock treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 36 At4g24790 828581 ATP binding / DNA binding / DNA-directed DNA polymerase F:DNA binding, DNA-directed DNA polymerase activity, ATP binding;P:DNA replication;C:DNA polymerase III complex;BOFMAPV C.G. S.X.
0.04 2e-1 36 At3g11510 820324 40S ribosomal protein S14 (RPS14B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus;BOPMAF C.G. S.X.
0.01 2e-1 36 At1g68790 843210 LINC3 (LITTLE NUCLEI3) F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAV C.G. S.X.
0.02 1e+0 34 At5g67180 836853 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:multicellular organismal development, response to heat, regulation of transcription, DNA-dependent;C:nucleus;POBV C.G. S.X.
0.04 1e+0 34 At5g26170 832686 WRKY50 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.02 1e+0 34 At3g25230 822117 ROF1 (ROTAMASE FKBP 1) Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. C.G. S.X.
0.03 1e+0 34 At2g24140 816948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-3 44 Glycine max Gma.6080.1.S1_at BQ611386 - - 1e-3 At2g21045 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig15528_at Contig15528 - - 1e+0 At3g46030 HTB11 C.G. S.X.
0.02 2e+0 34 Oryza sativa Os03g0626800 AK112092.1 - - 2e-50 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) C.G. S.X.
0.07 2e-5 50 Populus trichocarpa PtpAffx.14188.1.A1_at CV275407 hypothetical protein - 2e-5 At2g21045 - C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.77649.1.S1_at CA744700 - - 3e+0 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1619291_at CD720380 - - 1e-2 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.1061.1.A1_at AI881945 Hypothetical protein LOC100193941 - 2e-1 At4g22160 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007568 The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage