Gene omics information

Query gene ID At2g20875
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g20875816621EPF1 (EPIDERMAL PATTERNING FACTOR 1)F:molecular_function unknown;P:stomatal complex patterning;C:unknown;PS.X.H.G.
0.8894.0At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFS.X.H.G.
0.8894.0At3g24140822000FMA (FAMA)Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.S.X.H.G.
0.8894.0At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAS.X.H.G.
0.7888.6At2g21080816643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;POS.X.H.G.
0.7788.0At4g17970827522unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFS.X.H.G.
0.7586.9At2g46070819215MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.S.X.H.G.
0.7486.1At1g11340837676S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
111.399.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
105.799.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
98.699.9GSM74903ice1_no treatment_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
90.099.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
89.899.9GSM74904ice1_3H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
78.899.9GSM74905ice1_3H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.046e-134At5g2244083230560S ribosomal protein L10A (RPL10aC)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;BOMPAFC.G.S.X.
0.026e-134At1g23080838916PIN7 (PIN-FORMED 7)Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.C.G.S.X.
0.032e+032At1g16770838248unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPBC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e+032Glycine maxPsAffx.CL385Contig2_s_atPsAffx.CL385Contig2--4e+0At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)C.G.S.X.
0.035e+030Hordeum vulgareContig20979_s_atContig20979--3e-1At1g50390fructokinase-relatedC.G.S.X.
0.045e+032Oryza sativaOs03g0807500AK068398.1-Plastocyanin-like domain containing protein5e-1At1g16500unknown proteinC.G.S.X.
0.231e-1273Populus trichocarpaPtpAffx.211305.1.S1_x_atpmrna22168hypothetical protein-4e-13At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)C.G.S.X.
0.062e-136Triticum aestivumTaAffx.4414.1.S1_atCA742587--2e-1At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)C.G.S.X.
0.063e+030Vitis vinifera1613839_atCB001705--2e-14At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)C.G.S.X.
0.044e+030Zea maysZm.8680.1.A1_atBM075162hypothetical protein LOC100277231-1e-3At1g70760CRR23 ((chlororespiratory reduction 23)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010375The regionalization process of establishing the non-random spatial arrangement of stomatal complex on the surface of a leaf. The stomatal complex is the stomatal guard cells and their associated epidermal cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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