CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g20740

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO S.X. H.G.
1.00 100.0 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
1.00 100.0 At5g32450 833204 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO S.X. H.G.
0.96 97.3 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. S.X. H.G.
0.96 97.3 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.93 96.4 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.93 96.4 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
0.93 96.4 At5g24400 832511 emb2024 (embryo defective 2024) F:6-phosphogluconolactonase activity, catalytic activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:peroxisome, chloroplast stroma, chloroplast;BOMFP S.X. H.G.
0.90 95.1 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
719.3 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.6 99.5 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
12.9 99.3 E-MEXP-509-raw-cel-829148276
11.7 99.3 E-MEXP-509-raw-cel-829148842
11.2 99.2 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.6 99.1 E-MEXP-509-raw-cel-829148913
9.5 99.1 E-MEXP-509-raw-cel-829148808
9.5 99.1 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
9.4 99.1 E-MEXP-509-raw-cel-829148348
8.9 99.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-2 38 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis C.G. S.X.
0.03 3e-1 36 At4g33625 829503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;P C.G. S.X.
0.00 3e-1 36 At1g55860 842036 UPL1 (UBIQUITIN-PROTEIN LIGASE 1) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.02 1e+0 34 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. C.G. S.X.
0.03 5e+0 32 Atmg00240 - - hypothetical protein C.G. S.X.
0.01 5e+0 32 At5g67340 836869 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Glycine max HgAffx.24248.1.S1_at CB934870 - - 2e-2 At2g20740 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare S0001000013A11F1_s_at S0001000013A11F1 - - 9e-4 At5g65960 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os05g0153300 9633.m00532 - Lipase, class 3 family protein 3e+0 At2g20740 - C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.43832.2.A1_at CV256667 hypothetical protein - 6e-2 At2g20740 - C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.59756.1.S1_at CA595837 - - 3e-1 At2g20740 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621047_at CB968782 - - 1e+0 At1g71050 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.03 1e-1 36 Zea mays Zm.1216.1.A1_at AI947882 IDP408 protein - 4e-1 At2g20740 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage