Gene omics information

Query gene ID At2g20720
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At2g20720816600pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.8391.4At3g44560823581FAR8 (FATTY ACID REDUCTASE 8)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFPS.X.H.G.
0.7788.0At4g31950829325CYP82C3member of CYP82CS.X.H.G.
0.7184.2At1g16420838212MC8 (METACASPASE 8)Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.S.X.H.G.
0.6781.6At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVS.X.H.G.
0.5974.7At3g28610822491ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
945.2100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
813.4100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
766.7100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
764.2100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
96.899.9GSM253200Nontransgenic(ga1-3rgargl2)-DEX-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible system
75.599.9E-MEXP-807-raw-cel-1173272948
71.299.9GSM134404St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
70.999.9GSM134421St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
59.099.8GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
56.499.8GSM134414St.Clair_1-111_430_Van-0_0.02%-silwet_Rep3_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-448At5g49340834994unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMOC.G.S.X.
0.037e-342At2g39020818488GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BOMFPAC.G.S.X.
0.014e-136At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVC.G.S.X.
0.014e-136At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVC.G.S.X.
0.014e-136At4g28000828913ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVC.G.S.X.
0.024e-136At3g05100819672-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFAC.G.S.X.
0.014e-136At3g05680819736EMB2016 (embryo defective 2016)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOFPBVC.G.S.X.
0.024e-136At3g25950822192-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxGmaAffx.56681.1.S1_atCA938383--8e-1At2g20720pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.031e-240Hordeum vulgareContig12717_atContig12717--2e-4At5g60990DEAD/DEAH box helicase, putative (RH10)C.G.S.X.
0.032e-138Oryza sativaOsAffx.25268.1.S1_at---0C.G.S.X.
0.032e-138Populus trichocarpaPtpAffx.209170.1.S1_s_atpmrna18156hypothetical protein-4e-1At3g0556060S ribosomal protein L22-2 (RPL22B)C.G.S.X.
0.041e-138Triticum aestivumTaAffx.51450.1.S1_atCA724780--4e-2At2g20720pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.035e-134Vitis vinifera1616204_atCF201346.1--3e-4At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)C.G.S.X.
0.038e-134Zea maysZm.4465.1.A1_atAI714996--2e-1At3g27210unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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