CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g20620

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At2g20620 816588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At5g19710 832091 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At2g31770 817734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV S.X. H.G.
0.39 48.4 At5g56620 835763 anac099 (Arabidopsis NAC domain containing protein 99) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PM S.X. H.G.
0.32 35.7 At1g26795 839221 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.28 30.3 At5g40360 834034 MYB115 (myb domain protein 115) putative transcription factor (MYB115) S.X. H.G.
0.25 22.6 At2g41470 818745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMO S.X. H.G.
0.23 19.3 At2g47430 819356 CKI1 (CYTOKININ-INDEPENDENT 1) Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
367.1 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
348.4 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
308.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
304.7 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
292.8 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
210.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
207.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
204.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-3 44 At2g20625 816589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 4e-1 36 At5g27944 6240316 sequence-specific DNA binding / transcription factor F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P C.G. S.X.
0.02 4e-1 36 At5g26950 832753 AGL93 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;P C.G. S.X.
0.02 4e-1 36 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB C.G. S.X.
0.02 4e-1 36 At5g27070 832765 AGL53 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, plasma membrane;P C.G. S.X.
0.02 4e-1 36 At2g18150 816328 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress, response to nematode;C:cell wall;PFOBM C.G. S.X.
0.02 4e-1 36 At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves C.G. S.X.
0.01 2e+0 34 At5g18360 831954 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAV C.G. S.X.
0.01 2e+0 34 At5g23390 832403 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max HgAffx.19245.1.S1_at CA939935 - - 6e-2 At5g26070 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig12338_at Contig12338 - - 6e-5 At3g50550 unknown protein C.G. S.X.
0.03 8e-1 36 Oryza sativa OsAffx.17660.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.58824.1.A1_at CK089459 - - 7e+0 At5g02680 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.117133.1.S1_x_at BQ609653 - - 2e-1 At3g49300 proline-rich family protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1620261_at CB341941 - - 8e-1 At2g20620 unknown protein C.G. S.X.
0.02 5e-2 38 Zea mays Zm.13184.1.S1_at CA409097 - - 2e-1 At2g20620 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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