CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g20616

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At2g20616 816587 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.90 95.1 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.88 94.0 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.84 91.9 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At4g19570 827699 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.84 91.9 At2g30430 817594 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At4g21950 828284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.81 90.4 At2g33010 817863 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
328.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
326.2 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
318.0 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
283.2 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
282.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
267.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
264.6 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.5 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
253.6 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
252.0 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 5e-80 297 At2g20815 816612 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOB C.G. S.X.
0.02 7e-2 38 At1g60420 842337 DC1 domain-containing protein F:oxidoreductase activity, antioxidant activity;P:response to cadmium ion;C:cellular_component unknown;BOMPAF C.G. S.X.
0.01 3e-1 36 At5g45520 834588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA C.G. S.X.
0.01 3e-1 36 At4g21550 828240 VAL3 (VP1/ABI3-LIKE 3) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:endomembrane system;PMO C.G. S.X.
0.02 3e-1 36 At2g30010 817552 - F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 3e-1 36 At1g10320 837571 U2 snRNP auxiliary factor-related F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:nucleus;MOBFPVA C.G. S.X.
0.02 1e+0 34 At5g18000 831667 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF C.G. S.X.
0.04 1e+0 34 At5g26690 832720 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max PsAffx.C69000074_at PsAffx.C69000074 - - 8e-2 At3g03460 unknown protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig1768_at Contig1768 - - 8e-1 At2g20616 unknown protein C.G. S.X.
0.06 4e-2 40 Oryza sativa OsAffx.9421.1.S1_x_at - - - 0 C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.215235.1.S1_at pmrna29306 hypothetical protein - 2e-1 At2g20616 unknown protein C.G. S.X.
0.03 3e-1 36 Triticum aestivum Ta.641.2.S1_at BJ257632 - - 3e-1 At2g20616 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1621616_at CB342121 hypothetical protein LOC100248502 - 1e+0 At2g20616 unknown protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.18074.1.A1_at CO521107 - - 4e-4 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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