CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g20320

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g20320 816551 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB S.X. H.G.
0.79 89.1 At3g29060 822550 - F:unknown;P:unknown;C:integral to membrane;MFPOVBA S.X. H.G.
0.78 88.6 At5g09430 830802 hydrolase F:hydrolase activity;P:unknown;C:unknown;BOMPAF S.X. H.G.
0.76 87.4 At1g12450 837802 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA S.X. H.G.
0.76 87.4 At4g01575 828124 serine protease inhibitor, Kazal-type family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.75 86.9 At4g27350 828843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPF S.X. H.G.
0.75 86.9 At5g61360 836257 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.74 86.1 At2g29050 817453 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) F:unknown;P:unknown;C:Golgi apparatus;BOMPFA S.X. H.G.
0.72 84.8 At1g73860 843722 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV S.X. H.G.
0.72 84.8 At3g05140 819676 RBK2 (Rop Binding protein Kinases 2) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.1 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
193.4 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
147.7 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
136.0 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
113.1 99.9 E-MEXP-1138-raw-cel-1432773002
112.9 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
103.1 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
97.6 99.9 E-MEXP-1138-raw-cel-1432772522
95.3 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
92.7 99.9 E-MEXP-1138-raw-cel-1432772586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-2 42 At5g35560 833521 DENN (AEX-3) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFP C.G. S.X.
0.01 4e-1 38 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. C.G. S.X.
0.01 4e-1 38 At2g22870 816818 EMB2001 (embryo defective 2001) F:GTP binding;P:embryonic development ending in seed dormancy;C:intracellular;BOFPMA C.G. S.X.
0.01 4e-1 38 At1g24060 839018 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 2e+0 36 At5g02340 831744 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMF C.G. S.X.
0.01 2e+0 36 At4g39570 830111 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOVA C.G. S.X.
0.01 2e+0 36 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max GmaAffx.91284.1.S1_at CF807009 - - 4e+0 At5g61410 RPE C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig8791_at Contig8791 - - 1e+0 At2g11910 unknown protein C.G. S.X.
0.04 3e-6 56 Oryza sativa Os03g0145500 AK066503.1 - DENN domain containing protein 2e-6 At2g20320 - C.G. S.X.
0.20 9e-12 73 Populus trichocarpa PtpAffx.202715.1.S1_at pmrna5435 hypothetical protein - 8e-17 At2g20320 - C.G. S.X.
0.01 1e-1 40 Triticum aestivum TaAffx.112600.1.S1_at CA622611 - - 4e+0 At4g11890 protein kinase family protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1607323_at CF210439 - - 3e+0 At3g60660 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.5336.1.A1_at AI619291 - - 2e+0 At5g39400 PTEN1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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