CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g19940

Gene name N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At2g19940 816513 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP S.X. H.G.
0.75 86.9 At3g13490 820551 OVA5 (OVULE ABORTION 5) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype. S.X. H.G.
0.57 73.8 At1g80600 844399 WIN1 (HOPW1-1-INTERACTING 1) Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320). S.X. H.G.
0.55 70.6 At4g33680 829510 AGD2 (ABERRANT GROWTH AND DEATH 2) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139. S.X. H.G.
0.55 70.6 At5g04710 830349 aspartyl aminopeptidase, putative F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA S.X. H.G.
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VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	S.X.	H.G.
0.53	68.6	At2g19940	816513	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP	S.X.	H.G.
0.75	86.9	At3g13490	820551	OVA5 (OVULE ABORTION 5)	Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.	S.X.	H.G.
0.57	73.8	At1g80600	844399	WIN1 (HOPW1-1-INTERACTING 1)	Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).	S.X.	H.G.
0.55	70.6	At4g33680	829510	AGD2 (ABERRANT GROWTH AND DEATH 2)	Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.	S.X.	H.G.
0.55	70.6	At5g04710	830349	aspartyl aminopeptidase, putative	F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA	S.X.	H.G.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.0 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.0 99.3 GSM133268 RIKEN-GODA5B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
10.5 99.2 GSM133266 RIKEN-GODA4B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
10.5 99.2 GSM133272 RIKEN-GODA7B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.8 99.1 GSM133258 RIKEN-GODA13B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.8 99.1 GSM133275 RIKEN-GODA9A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.7 99.1 GSM133276 RIKEN-GODA9B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.2 99.1 GSM133265 RIKEN-GODA4A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.1 99.1 GSM133260 RIKEN-GODA1B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
8.7 99.0 GSM133270 RIKEN-GODA6B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
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Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.0	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.0	99.3	GSM133268	RIKEN-GODA5B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
10.5	99.2	GSM133266	RIKEN-GODA4B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
10.5	99.2	GSM133272	RIKEN-GODA7B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
9.8	99.1	GSM133258	RIKEN-GODA13B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
9.8	99.1	GSM133275	RIKEN-GODA9A-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
9.7	99.1	GSM133276	RIKEN-GODA9B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
9.2	99.1	GSM133265	RIKEN-GODA4A-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
9.1	99.1	GSM133260	RIKEN-GODA1B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings
8.7	99.0	GSM133270	RIKEN-GODA6B-6	GSE5696	AtGenExpress: Effect of brassinosteroids in seedlings

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-1 36 At5g10440 830908 CYCD4 Encodes a cyclin involved in cell proliferation during stomatal cell lineage development. C.G. S.X.
0.02 2e+0 34 At5g43720 834392 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 2e+0 34 At5g41990 834204 WNK8 (WITH NO LYSINE (K) KINASE 8) Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Interacts specifically with and phosphorylates AtVHA-C, subunit C of the vacuolar H+-ATPase. C.G. S.X.
0.01 2e+0 34 At5g19360 832056 CPK34 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 2e+0 34 At5g12180 831091 CPK17 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 2e+0 34 At5g47580 834808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.01 2e+0 34 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF C.G. S.X.
0.02 2e+0 34 At5g58490 835962 cinnamoyl-CoA reductase family F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;BOPFMAV C.G. S.X.
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HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	C.G.	S.X.
0.02	5e-1	36	At5g10440	830908	CYCD4	Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.	C.G.	S.X.
0.02	2e+0	34	At5g43720	834392	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA	C.G.	S.X.
0.01	2e+0	34	At5g41990	834204	WNK8 (WITH NO LYSINE (K) KINASE 8)	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Interacts specifically with and phosphorylates AtVHA-C, subunit C of the vacuolar H+-ATPase.	C.G.	S.X.
0.01	2e+0	34	At5g19360	832056	CPK34	member of Calcium Dependent Protein Kinase	C.G.	S.X.
0.01	2e+0	34	At5g12180	831091	CPK17	member of Calcium Dependent Protein Kinase	C.G.	S.X.
0.01	2e+0	34	At5g47580	834808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	C.G.	S.X.
0.01	2e+0	34	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	C.G.	S.X.
0.02	2e+0	34	At5g58490	835962	cinnamoyl-CoA reductase family	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;BOPFMAV	C.G.	S.X.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-24 115 Glycine max GmaAffx.51427.3.S1_at CA783226 - - 3e-25 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.13 5e-18 91 Hordeum vulgare Contig4833_at Contig4833 - - 2e-17 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.15 5e-21 103 Oryza sativa Os03g0617900 AK071544.1 - N-acetyl-gamma-glutamyl-phosphate reductase,monofunctional family protein 5e-21 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.63 1e-82 307 Populus trichocarpa PtpAffx.215797.1.S1_at pmrna30189 hypothetical protein - 9e-83 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.09 7e-16 85 Triticum aestivum Ta.1829.1.S1_at BE515657 - - 1e-15 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.45 2e-68 258 Vitis vinifera 1614742_at CD004009 hypothetical protein LOC100255475 - 7e-68 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.17 3e-16 85 Zea mays Zm.10384.1.A1_at CA404301 hypothetical protein LOC100191877 - 1e-15 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
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HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.
0.39	1e-24	115	Glycine max	GmaAffx.51427.3.S1_at	CA783226	-	-	3e-25	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.13	5e-18	91	Hordeum vulgare	Contig4833_at	Contig4833	-	-	2e-17	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.15	5e-21	103	Oryza sativa	Os03g0617900	AK071544.1	-	N-acetyl-gamma-glutamyl-phosphate reductase,monofunctional family protein	5e-21	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.63	1e-82	307	Populus trichocarpa	PtpAffx.215797.1.S1_at	pmrna30189	hypothetical protein	-	9e-83	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.09	7e-16	85	Triticum aestivum	Ta.1829.1.S1_at	BE515657	-	-	1e-15	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.45	2e-68	258	Vitis vinifera	1614742_at	CD004009	hypothetical protein LOC100255475	-	7e-68	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.
0.17	3e-16	85	Zea mays	Zm.10384.1.A1_at	CA404301	hypothetical protein LOC100191877	-	1e-15	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.
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ECC	GO ID	Process Name
X	GO:0046686	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C	GO:0006520	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00013 Arginine and proline metabolism (Urea cycle and related metabolism)

KaPPA-View ID	Link to Kappa-View	Pathway Name
00013		Arginine and proline metabolism (Urea cycle and related metabolism)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00330 Arginine and proline metabolism
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100 Metabolic pathways
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KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name
00330		Arginine and proline metabolism
01064		Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100		Metabolic pathways

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Query gene ID	At2g19940
Gene name	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization
Organism	Arabidopsis thaliana

Gene omics information

Query gene ID At2g19940 Gene name N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization Organism Arabidopsis thaliana

Co-expressed genes

Specifically expressed experiments

Homologous genes

Paralogous genes

Orthologous genes

Biological processes

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.KaPPA-View IDLink to Kappa-ViewPathway Name00013Arginine and proline metabolism (Urea cycle and related metabolism)

Query gene ID At2g19940

Gene name N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization

Organism Arabidopsis thaliana

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00013 Arginine and proline metabolism (Urea cycle and related metabolism)