CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g19900

Gene name ATNADP-ME1 (NADP-malic enzyme 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.95 97.0 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.87 93.5 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.84 91.9 At4g09610 826546 GASA2 (GAST1 PROTEIN HOMOLOG 2) F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P S.X. H.G.
0.83 91.4 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.83 91.4 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
0.83 91.4 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.82 90.9 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.82 90.9 At2g19320 816449 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
325.9 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
291.9 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
289.5 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
283.0 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
273.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
262.2 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
256.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
249.2 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
247.0 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
219.1 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-30 135 At1g79750 844314 ATNADP-ME4 (NADP-malic enzyme 4) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed. C.G. S.X.
0.38 7e-20 99 At5g11670 831039 ATNADP-ME2 (NADP-malic enzyme 2) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis. C.G. S.X.
0.22 4e-12 73 At5g25880 832657 ATNADP-ME3 (NADP-malic enzyme 3) The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals. C.G. S.X.
0.03 2e-4 48 At2g13560 815842 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA C.G. S.X.
0.02 6e-2 40 At3g07860 819977 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO C.G. S.X.
0.01 6e-2 40 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 2e-1 38 At5g02360 831773 DC1 domain-containing protein F:zinc ion binding;P:biological_process unknown;C:intracellular;P C.G. S.X.
0.01 9e-1 36 At5g46660 834709 CHP-rich zinc finger protein, putative F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 9e-1 36 At3g59510 825120 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 7e-24 113 Glycine max Gma.4408.1.S1_at CD405342 - - 2e-32 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) C.G. S.X.
0.17 3e-23 109 Hordeum vulgare Contig4075_at Contig4075 - - 7e-23 At2g19900 ATNADP-ME1 (NADP-malic enzyme 1) C.G. S.X.
0.29 8e-46 186 Oryza sativa Os01g0188400 D16499.1 - NADP-malic enzyme 2e-85 At5g11670 ATNADP-ME2 (NADP-malic enzyme 2) C.G. S.X.
0.50 1e-74 282 Populus trichocarpa Ptp.5508.1.S1_s_at X56233.1 hypothetical protein - 1e-74 At2g19900 ATNADP-ME1 (NADP-malic enzyme 1) C.G. S.X.
0.17 2e-20 101 Triticum aestivum Ta.18775.1.S1_at AF467542.1 upregulated following infection by Puccinia (rust) species - 8e-25 At5g25880 ATNADP-ME3 (NADP-malic enzyme 3) C.G. S.X.
0.39 3e-53 208 Vitis vinifera 1610626_at U67426.1 malate dehydrogenase - 4e-71 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) C.G. S.X.
0.21 5e-19 95 Zea mays Zm.2553.1.A1_a_at BQ619023 NADP-dependent malic enzyme - 5e-37 At5g11670 ATNADP-ME2 (NADP-malic enzyme 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006108 The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00620 Pyruvate metabolism
00710 Carbon fixation in photosynthetic organisms
01062 Biosynthesis of terpenoids and steroids
01063 Biosynthesis of alkaloids derived from shikimate pathway
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065 Biosynthesis of alkaloids derived from histidine and purine
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01100 Metabolic pathways
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