Gene omics information

Query gene ID At2g19900
Gene name ATNADP-ME1 (NADP-malic enzyme 1)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.9597.0At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.8793.5At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8592.4At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8491.9At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PS.X.H.G.
0.8391.4At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.8391.4At1g75490843885DNA binding / transcription factorencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.S.X.H.G.
0.8391.4At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8290.9At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8290.9At2g19320816449unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
325.9100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
291.9100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
289.5100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
283.0100.0GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
273.8100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
262.2100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
256.2100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
249.2100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
247.0100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
219.1100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.331e-30135At1g79750844314ATNADP-ME4 (NADP-malic enzyme 4)The malic enzyme (EC encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.C.G.S.X.
0.387e-2099At5g11670831039ATNADP-ME2 (NADP-malic enzyme 2)The malic enzyme (EC encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.C.G.S.X.
0.224e-1273At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.C.G.S.X.
0.032e-448At2g13560815842malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFAC.G.S.X.
0.026e-240At3g07860819977unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOC.G.S.X.
0.016e-240At2g13900815874DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.012e-138At5g02360831773DC1 domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:intracellular;PC.G.S.X.
0.019e-136At5g46660834709CHP-rich zinc finger protein, putativeF:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PC.G.S.X.
0.019e-136At3g59510825120leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMBOFAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.357e-24113Glycine maxGma.4408.1.S1_atCD405342--2e-32At1g79750ATNADP-ME4 (NADP-malic enzyme 4)C.G.S.X.
0.173e-23109Hordeum vulgareContig4075_atContig4075--7e-23At2g19900ATNADP-ME1 (NADP-malic enzyme 1)C.G.S.X.
0.298e-46186Oryza sativaOs01g0188400D16499.1-NADP-malic enzyme2e-85At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
0.501e-74282Populus trichocarpaPtp.5508.1.S1_s_atX56233.1hypothetical protein-1e-74At2g19900ATNADP-ME1 (NADP-malic enzyme 1)C.G.S.X.
0.172e-20101Triticum aestivumTa.18775.1.S1_atAF467542.1upregulated following infection by Puccinia (rust) species-8e-25At5g25880ATNADP-ME3 (NADP-malic enzyme 3)C.G.S.X.
0.393e-53208Vitis vinifera1610626_atU67426.1malate dehydrogenase-4e-71At1g79750ATNADP-ME4 (NADP-malic enzyme 4)C.G.S.X.
0.215e-1995Zea maysZm.2553.1.A1_a_atBQ619023NADP-dependent malic enzyme-5e-37At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00120Link to KaPPA-View 4Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00620Link to KEGG PATHWAYPyruvate metabolism
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01100Link to KEGG PATHWAYMetabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage