CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g19390

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At2g19390 816458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.60 75.7 At3g11860 820359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.25 22.6 At1g64570 842765 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.20 14.4 At4g19440 827685 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA S.X. H.G.
0.20 14.4 At5g61990 836320 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA S.X. H.G.
0.13 5.8 At3g19510 821485 HAT3.1 Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. S.X. H.G.
0.12 4.9 At2g01130 814642 ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding F:in 6 functions;P:biological_process unknown;C:intracellular;BMOFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
230.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
205.8 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
205.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
162.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
156.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
148.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.9 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.6 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
132.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
131.6 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 823 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV C.G. S.X.
0.01 1e-1 40 At2g22670 816798 IAA8 IAA8 (IAA8) gene is auxin inducible. C.G. S.X.
0.01 5e-1 38 At5g24000 832465 unknown protein F:unknown;P:unknown;C:chloroplast;BOPA C.G. S.X.
0.01 5e-1 38 At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 2e+0 36 At5g19170 832037 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.01 2e+0 36 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 36 Glycine max GmaAffx.59194.1.S1_at BE473746 - - 6e-2 At1g79760 DTA4 (DOWNSTREAM TARGET OF AGL15-4) C.G. S.X.
0.02 2e-1 38 Hordeum vulgare Contig15879_at Contig15879 - - 8e+0 At5g61110 protein binding / zinc ion binding C.G. S.X.
0.01 1e-2 44 Oryza sativa Os05g0107300 AK121230.1 - Conserved hypothetical protein 9e-3 At2g19390 unknown protein C.G. S.X.
0.04 3e-6 56 Populus trichocarpa PtpAffx.206375.1.S1_at pmrna12660 hypothetical protein - 3e-7 At2g19390 unknown protein C.G. S.X.
0.02 2e+0 36 Triticum aestivum TaAffx.78077.2.S1_at CA737975 - - 1e+0 At1g10522 unknown protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1614377_at CB344123 - - 9e-1 At4g12900 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein C.G. S.X.
0.02 3e+0 34 Zea mays Zm.17625.1.A1_at CF631845 - - 4e-23 At1g10200 WLIM1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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