CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g19070

Gene name SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At2g19070 816424 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) S.X. H.G.
0.98 97.8 At1g01280 839470 CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2) member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis). S.X. H.G.
0.98 97.8 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.98 97.8 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV S.X. H.G.
0.97 97.6 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.97 97.6 At3g23770 821959 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.97 97.6 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.97 97.6 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.97 97.6 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.97 97.6 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
306.5 100.0 E-MEXP-1592-raw-cel-1617526848
242.4 100.0 E-MEXP-1592-raw-cel-1617526912
224.4 100.0 E-MEXP-1592-raw-cel-1617526944
197.0 100.0 E-MEXP-1592-raw-cel-1617526880
159.9 99.9 E-MEXP-1592-raw-cel-1617526976
149.7 99.9 GSM131580 ATGE_32_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
141.4 99.9 GSM131581 ATGE_32_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
115.8 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
112.6 99.9 GSM27359 WT Floral Bud GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
112.4 99.9 GSM131579 ATGE_32_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At5g44680 834497 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF C.G. S.X.
0.02 2e-1 38 At5g48930 834951 HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE) At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth. C.G. S.X.
0.02 7e-1 36 At5g23860 832451 TUB8 beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. C.G. S.X.
0.02 7e-1 36 At4g36780 829831 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 7e-1 36 At3g12980 820484 HAC5 Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14. C.G. S.X.
0.02 7e-1 36 At3g50750 824239 brassinosteroid signalling positive regulator-related F:transcription regulator activity;P:biological_process unknown;C:vacuole;OPFMB C.G. S.X.
0.01 3e+0 34 Atcg00540 - - Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. C.G. S.X.
0.02 3e+0 34 At5g01210 831901 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.01 3e+0 34 At4g27910 828904 SDG16 (SET DOMAIN PROTEIN 16) F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max Gma.17985.1.S1_at CD416450 - - 3e-1 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) C.G. S.X.
0.02 8e-2 38 Hordeum vulgare HV_CEb0003E11r2_at HV_CEb0003E11r2 - - 7e-1 At2g45434 unknown protein C.G. S.X.
0.02 5e+0 34 Oryza sativa Os01g0230800 NM_188614.1 - Hypothetical protein 2e+0 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) C.G. S.X.
0.05 4e-3 44 Populus trichocarpa PtpAffx.214477.1.S1_at pmrna28155 hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein - 3e-3 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.93971.1.S1_at BG909411 - - 8e-1 At4g37810 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1621153_at CB969140 hypothetical protein LOC100253912 - 8e+0 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.16781.1.A1_at CO523200 hypothetical protein LOC100279993 - 2e+0 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080088 The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates.
X GO:0009555 The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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