Gene omics information

Query gene ID At2g19070
Gene name SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6882.2At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)S.X.H.G.
0.9897.8At1g01280839470CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2)member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).S.X.H.G.
0.9897.8At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.S.X.H.G.
0.9897.8At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVS.X.H.G.
0.9797.6At3g07450819933protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9797.6At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
0.9797.6At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9797.6At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFS.X.H.G.
0.9797.6At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVS.X.H.G.
0.9797.6At1g02050839280chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
306.5100.0E-MEXP-1592-raw-cel-1617526848
242.4100.0E-MEXP-1592-raw-cel-1617526912
224.4100.0E-MEXP-1592-raw-cel-1617526944
197.0100.0E-MEXP-1592-raw-cel-1617526880
159.999.9E-MEXP-1592-raw-cel-1617526976
149.799.9GSM131580ATGE_32_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)
141.499.9GSM131581ATGE_32_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)
115.899.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
112.699.9GSM27359WT Floral BudGSE680Transcript Profiling of Arabidopsis Plant Life Cycle
112.499.9GSM131579ATGE_32_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-240At5g44680834497methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFC.G.S.X.
0.022e-138At5g48930834951HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.C.G.S.X.
0.027e-136At5g23860832451TUB8beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.C.G.S.X.
0.027e-136At4g36780829831transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.017e-136At3g12980820484HAC5Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.C.G.S.X.
0.027e-136At3g50750824239brassinosteroid signalling positive regulator-relatedF:transcription regulator activity;P:biological_process unknown;C:vacuole;OPFMBC.G.S.X.
0.013e+034Atcg00540--Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.C.G.S.X.
0.023e+034At5g01210831901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBC.G.S.X.
0.013e+034At4g27910828904SDG16 (SET DOMAIN PROTEIN 16)F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-136Glycine maxGma.17985.1.S1_atCD416450--3e-1At2g19070SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)C.G.S.X.
0.028e-238Hordeum vulgareHV_CEb0003E11r2_atHV_CEb0003E11r2--7e-1At2g45434unknown proteinC.G.S.X.
0.025e+034Oryza sativaOs01g0230800NM_188614.1-Hypothetical protein2e+0At2g19070SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)C.G.S.X.
0.054e-344Populus trichocarpaPtpAffx.214477.1.S1_atpmrna28155hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein-3e-3At2g19070SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)C.G.S.X.
0.021e+132Triticum aestivumTaAffx.93971.1.S1_atBG909411--8e-1At4g37810unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1621153_atCB969140hypothetical protein LOC100253912-8e+0At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)C.G.S.X.
0.021e+034Zea maysZm.16781.1.A1_atCO523200hypothetical protein LOC100279993-2e+0At2g19070SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080088The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates.
XGO:0009555The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
XGO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00355Link to KaPPA-View 4Acyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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